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Workflow Entry: Get Kegg Gene information
| Citations (0) | Version History | Reviews (0) | Comments (1) |
 Version 2 (latest)
(of 2)
|
Version created on:
26/01/09 @ 18:06:12
by:
Paul Fisher
|
Revision comments 
Last edited on: 14/12/09 @ 12:05:23 by: Paul Fisher
Title: Get Kegg Gene information
Type: Taverna 1
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Description
This workflow gets a series of information relating to a list of KEGG genes supplied to it. It also removes any null values from a list of strings.
Example input for this workflow is given below (new line separated):
mmu:13163
hsa:1616
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Option 1:
Launch in TavernaNote: you need to have both the WHIP Launcher and the Taverna myExperiment/WHIP plugin installed on your machine for this to work. See here for information.
Option 2:
Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/611/download?version=2
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Workflow Components
Workflow Type
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Current:
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-
omim and pathways
-
Get KEGG gene descriptions and pathways
- Private item
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Earliest Version:
[1] - Get Kegg Gene information
Latest Version:
[2] - Get Kegg Gene information
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Other workflows that use similar services
(88)
Only the first 2 workflows that use similar services are shown. View all workflows that use these services.
|
Original Uploader |
Created: 20/01/12 @ 09:32:55 | Last updated: 20/01/12 @ 09:32:56
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
This workflow searches for genes which reside in a QTL (Quantitative Trait Loci) region in the mouse, Mus musculus. The workflow requires an input of: a chromosome name or number; a QTL start base pair position; QTL end base pair position. Data is then extracted from BioMart to annotate each of the genes found in this region. The Entrez and UniProt identifiers are then sent to KEGG to obtain KEGG gene identifiers. The KEGG gene identifiers are then used to searcg for pathways in the KEGG path...
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 14 times | Downloaded: 4 times This Workflow has no tags! |
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|
Original Uploader |
Created: 15/11/10 @ 12:25:01 | Last updated: 15/11/10 @ 12:28:12
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
This workflow searches for genes which were found to be differentially expressed from a microarray study in the mouse, Mus musculus. The workflow requires an input of gene ref_seq identifiers. Data is then extracted from BioMart to annotate each of the genes found for each ref_seq id. The Entrez and UniProt identifiers are then sent to KEGG to obtain KEGG gene identifiers. The KEGG gene identifiers are then used to search for pathways in the KEGG pathway database.
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 62 times | Downloaded: 35 times Tags (34): |
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Linked Data
Non-Information Resource URI: http://www.myexperiment.org/workflows/611
Alternative Formats
Copyright © 2007 - 2011 The University of Manchester and University of Southampton
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you can use this kegg id : "path:hsa05216" to test this workflow