Workflow Entry: What is Paget's disease sparql query example

Created at: 20/01/09 @ 03:34:08

Version 3 (latest) (of 3)

Version created on: 20/01/09 @ 03:34:08 by: Francois Belleau | Revision comments Expand

Title: What is Paget's disease sparql query example

Type: Taverna 2

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Description

SELECT distinct ?s1
FROM <http://atlas.bio2rdf.org/sparql>
WHERE {
?s1 ?p1 ?o1 .
?o1 bif:contains "paget" .
FILTER( regex(?s1, "omim")
OR regex(?s1, "geneid") OR regex(?s1, "uniprot"))
}

followed by

SELECT ?type1, count(*)
FROM <http://localhost:8890/sparql>
WHERE {
?s1 ?p1 ?o1 .
?o1 bif:contains "paget" .
?s1

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Workflow Components

Authors (1)

Titles (1)

Descriptions (0)

Inputs (0)

Processors (8)

Name	Type	Description
geneid_omim_uniprot_pubmed	stringconstant
paget	stringconstant
Split_string_into_string_list	localworker
sponge_uri	workflow
text_search_by_namespace	workflow
html2uris	workflow
localhost_8890_sparql	localworker
sparql_query	stringconstant

Beanshells (3)

Name	Inputs	Outputs
sponge_uri	uri	sparql_xml
text_search	string namespace	html
html2uri	html	uris

Outputs (4)

Name	Description
out1
out2
out3
out4

Datalinks (10)

Source	Sink
geneid_omim_uniprot_pubmed:value	Split_string_into_string_list:string
html2uris:uris	sponge_uri:uri
Split_string_into_string_list:split	text_search_by_namespace:namespace
paget:value	text_search_by_namespace:string
text_search_by_namespace:html	html2uris:html
sparql_query:value	localhost_8890_sparql:url
text_search_by_namespace:html	out1
html2uris:uris	out2
sponge_uri:sparql_xml	out3
localhost_8890_sparql:contents	out4