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Creator:

Alan Williams

Taverna 1.7.1 starter pack

Created: 17/07/08 @ 21:06:12 | Updated: 20/07/08 @ 15:46:51

17 items in this pack

Comments: 0 | Viewed: 279 times |

Administrator:

Alan Williams

Taverna workflow workbench examples

Unique name: tavernaExamples Created: Wednesday 05 March 2008 @ 13:45:09 (GMT)

11 shared items

Uploader:

Antoon Goderis

1 (v2)

Created: 06/11/07 @ 16:59:05 | Updated: 20/11/07 @ 16:18:31

Credits: Antoon Goderis Carole Goble A. Random Scientist try it out

Attributions:

License: Creative Commons Attribution-Share Alike 3.0 License

No description

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 454 times | Downloaded: 376 times

Uploader:

Stuart Owen

Extract_GetCompoundDetails_with_xpath (v1)

Created: 28/11/07 @ 15:46:02 | Updated: 19/02/08 @ 15:35:47

Credits: Stuart Owen Egon Willighagen

License: Creative Commons Attribution-Share Alike 3.0 License

No description

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 431 times | Downloaded: 483 times

Uploader:

Alan Williams

BiomartAndEMBOSSAnalysis (v2)

Created: 05/03/08 @ 14:01:16 | Updated: 27/03/08 @ 12:14:09

License: Creative Commons Attribution 3.0 License

Using Biomart and EMBOSS soaplab services, This workflow retrieves a number of sequences from 3 species: mouse, human, rat; align them, and returns a plot of the alignment result. Corresponding sequence ids are also returned.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 427 times | Downloaded: 362 times

Uploader:

Alan Williams

Fetch today's xkcd comic (v1)

Created: 05/03/08 @ 14:08:52 | Updated: 07/04/08 @ 13:54:04

Credits: Tomoinn Stian Soiland-Reyes

Attributions:

License: Creative Commons Attribution 3.0 License

Use the local java plugins and some filtering operations to fetch the comic strip image from http://xkcd.com/ Based on the FetchDailyDilbert workflow.

Rating: 4.0 / 5 (1 rating) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 395 times | Downloaded: 262 times

Uploader:

Alan Williams

Demonstration of configurable iteration (v1)

Created: 05/03/08 @ 14:10:51 | Updated: 25/03/08 @ 14:40:27

Credits: Tomoinn

License: Creative Commons Attribution 3.0 License

This workflow shows the use of the iteration strategy editor to ensure that only relevant combinations of inputs are used during an implicit iteration.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 310 times | Downloaded: 237 times

Uploader:

Alan Williams

Retrieve SNPs from regions around known genes (v1)

Created: 05/03/08 @ 14:12:32 | Updated: 29/07/08 @ 15:18:38

Credits: Tomoinn

License: Creative Commons Attribution 3.0 License

Given a list of Gene IDs this workflow will query against the Ensembl human genome data to fetch the genomic region for each gene, extend that region by 1000bp in each direction and use this set of ranges, one per gene, to build a query against dbSNP to return the SNP identifier and location information (chromosome name, strand and position)

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 175 times | Downloaded: 140 times

Uploader:

Alan Williams

GBSeq test (v2)

Created: 05/03/08 @ 14:15:35 | Updated: 31/03/08 @ 15:55:09

Credits: Franck Tanoh

License: Creative Commons Attribution 3.0 License

This workflow retrieves nucleotide and protein sequences with the literature and references associated to them given a protein and a nucleotide id.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 461 times | Downloaded: 314 times

Uploader:

Stian Soiland-Reyes

Staged iteration strategy (v1)

Created: 07/05/08 @ 12:10:27 | Updated: 07/05/08 @ 12:32:36

Credits: Stian Soiland-Reyes

License: Creative Commons Attribution-Share Alike 3.0 License

Consider two lists A and B, of equal size 3. A[1] corresponds to B[1], A[2] to B[2], etc, for instance A are image scans from 2007 and B from 2008, and the index indicates the patient number. A = [a0, a1, a2] B = [b0, b1, b2] There's then two lists of possible parameters P and Q, of different lengths, P has 2 and Q has 4 items. P = [p0, p1] Q = [q0, q1, q2, q3] Each of the A items should be processed in ap using each of the P parameters, and each of the B items ...

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 334 times | Downloaded: 158 times