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InviteWorkflow Entry: Pathways and Gene annotations for Arabidopsis affy data
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 Version 2 (latest)
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Version created on:
06/03/09 @ 17:18:13
by:
Paul Fisher
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Last edited on: 03/12/09 @ 16:59:13 by: Paul Fisher
Title: Pathways and Gene annotations for Arabidopsis affy data
Type: Taverna 1
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Description
This workflow searches for genes obtained from affy_ath1 affymetrix probeset identifiers. The Entrez and UniProt identifiers are then sent to KEGG to obtain KEGG gene identifiers. The KEGG gene identifiers are then used to searcg for pathways in the KEGG pathway database.
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[1] - Pathways and Gene annotations for Arabidopsis affy data
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[2] - Pathways and Gene annotations for Arabidopsis affy data
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Original Uploader |
Created: 08/07/09 @ 16:28:34
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License: Creative Commons Attribution-No Derivative Works 3.0 Unported License
This workflow searches for genes which are found to be differentially expressed in a microarray study using Arabidopsis thaliana. The workflow requires an input of a list of differentially expressed AffyMetrix Probeset identifiers. Data is then extracted from BioMart to annotate each of the genes. The UniProt identifiers are then sent to KEGG to obtain KEGG gene identifiers. The KEGG gene identifiers are then used to searcg for pathways in the KEGG pathway database.
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 142 times | Downloaded: 28 times Tags (19): |
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Original Uploader |
Created: 12/07/08 @ 09:15:13 | Last updated: 12/07/08 @ 20:20:52
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
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Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 69 times | Downloaded: 35 times Tags (1): |
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Non-Information Resource URI: http://www.myexperiment.org/workflows/726
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