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InviteWorkflow Entry: Search InChI in NCBI eSearch (pccompound)
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 Version 1
(of 1)
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Version created on:
30/03/09 @ 09:26:25
by:
Michael Gerlich
|
Revision comments 
Last edited on: 30/03/09 @ 09:47:01 by: Michael Gerlich
Title: Search InChI in NCBI eSearch (pccompound)
Type: Taverna 1
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Description
This workflow takes in a search term (e.g. InChI) for search in PubChem pccompound database. The result is an xml file containing summary information about the search term and also a compound image and the compound webpage fetched from Pubchem.
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Option 1:
Launch in TavernaNote: you need to have both the WHIP Launcher and the Taverna myExperiment/WHIP plugin installed on your machine for this to work. See here for information.
Option 2:
Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/740/download?version=1
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Earliest Version:
[1] - Search InChI in NCBI eSearch (pccompound)
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|
Original Uploader |
Created: 30/03/09 @ 09:30:32 | Last updated: 30/03/09 @ 09:49:13
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
Workflow that queries MassBank DB to retrieve database identifiers (KEGG, PubChem, InChI) and continue search with them to retrieve pathways from KEGG for given compound identifier,searches PubChem via eutils and PUG, queries ChemSpider for compound information and image.
Note: Usage of ChemSpider web services requires a valid security token - receive one by registering at ChemSpider (look at your profile to see your token)
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 198 times | Downloaded: 0 times Tags (21): |
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|
Original Uploader |
Created: 05/07/10 @ 15:32:19 | Last updated: 02/09/10 @ 04:43:04
Credits:
License: GNU Lesser General Public License (LGPL) 2.1
An example workflow using the U-Compare text mining system inside embedded. Users can easily make their own workflow with U-Compare reusing this workflow. This workflow retrieves abstract texts from Pubmed with user specified query, inputs the texts to U-Compare, interprets the output of U-Compare. You have to download and store the UIMA CPE XML descriptor file (StdinPPIExtraction-CPE-EventMine.xml) to run the default setting, which runs a event extraction text mining workflow by U-Compare. S...
Rating: 5.0 / 5 (1 rating) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 115 times | Downloaded: 60 times This Workflow has no tags! |
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Linked Data
Non-Information Resource URI: http://www.myexperiment.org/workflows/740
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Copyright © 2007 - 2011 The University of Manchester and University of Southampton
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