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InviteWorkflow Entry: MassBank to KEGG
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 Version 1
(of 1)
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Version created on:
30/03/09 @ 09:30:32
by:
Michael Gerlich
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Revision comments 
Last edited on: 30/03/09 @ 09:49:14 by: Michael Gerlich
Title: MassBank to KEGG
Type: Taverna 1
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Description
Workflow that queries MassBank DB to retrieve database identifiers (KEGG, PubChem, InChI) and continue search with them to retrieve pathways from KEGG for given compound identifier,searches PubChem via eutils and PUG, queries ChemSpider for compound information and image.
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Earliest Version:
[1] - MassBank to KEGG
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Original Uploader |
Created: 17/03/10 @ 10:53:02
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Attributions:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
Workflow takes in a text file of microRNAs from microCOSM (at the EBI) and outputs a list of KEGG pathway information, including genes in pathways and pathway abstracts from PubMed. The results can then be used in various text mining applications/workflows to rank the results against a given disease.Workflow takes in a file of microRNAs
Rating: 5.0 / 5 (1 rating) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 150 times | Downloaded: 2 times Tags (21): |
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Original Uploader |
Created: 13/07/10 @ 14:15:41 | Last updated: 13/07/10 @ 14:16:17
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
Performs an asynchronous search on ChemSpider by molecular formula
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 17 times | Downloaded: 8 times Tags (3): |
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Linked Data
Non-Information Resource URI: http://www.myexperiment.org/workflows/741
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Copyright © 2007 - 2011 The University of Manchester and University of Southampton
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