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KEGG Gene IDs to KEGG Pathways

Workflow Entry: KEGG Gene IDs to KEGG Pathways

Created at: 04/06/09 @ 18:41:36 Last updated: 07/01/10 @ 15:31:37

Version 1 (of 1)

Version created on: 04/06/09 @ 18:41:36 by: Paolo | Revision comments Expand

Last edited on: 07/01/10 @ 15:31:39 by: Paolo

Title: KEGG Gene IDs to KEGG Pathways

Type: Taverna 2

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Description

this is a simplified version of Paul's workflow (linked?) that is designed to be provenance-friendly

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Workflow Components

Authors (1)

Titles (2)

Descriptions (1)

Inputs (1)

Name	Description
list_of_geneIDList

Processors (5)

Name	Type	Description
get_pathways_by_genes	wsdl	See the Service entry for this web service.
getCommonPathways	wsdl	See the Service entry for this web service.
Flatten_List	localworker
getPathwayDescriptions	wsdl	See the Service entry for this web service.
getPathwayDescriptions2	wsdl	See the Service entry for this web service.

Beanshells (0)

Outputs (2)

Name	Description
paths_per_gene
commonPathways

Datalinks (7)

Source	Sink
list_of_geneIDList	get_pathways_by_genes:genes_id_list
Flatten_List:outputlist	getCommonPathways:genes_id_list
list_of_geneIDList	Flatten_List:inputlist
get_pathways_by_genes:return	getPathwayDescriptions:string
getCommonPathways:return	getPathwayDescriptions2:string
getPathwayDescriptions:return	paths_per_gene
getPathwayDescriptions2:return	commonPathways

Coordinations (0)

Information Workflow Type

Taverna 2

Information Original Uploader

Paolo

Information License

All versions of this Workflow are licensed under:

Information Credits (1)

(People/Groups)

Paolo

Information Attributions (1)

(Workflows/Files)

Pathways and Gene annotations for QTL region

Information Tags (3)

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Information Ratings (0)

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Information Favourited By (0)

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Information Statistics

737 viewings

703 downloads

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Citations (0)

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Version History

Earliest Version:
[1] - KEGG Gene IDs to KEGG Pathways

Created on: Thursday 04 June 2009 @ 18:41:36 (GMT)

Created by: Paolo

Last edited on: Thursday 07 January 2010 @ 15:31:39 (GMT)

Last edited by: Paolo

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Other workflows that use similar services (91)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.

Taverna 2

Original Uploader

Katy Wolstencroft

NCBI Gi to Kegg Pathway Descriptions (v2)

Created: 12/01/12 @ 09:46:31 | Last updated: 12/01/12 @ 14:54:37

Credits: Katy Wolstencroft

Attributions: NCBI Gi to Kegg Pathways

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This workflow accepts a list of genbank gene identifiers and returns descriptions of gene functions and a list of all pathways each gene is involved in, according to the KEGG database.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 6 times | Downloaded: 8 times

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