Workflow Entry: BioMart and Emboss Analysis (T2)

This is the Taverna 2 version of the Biomart and Emboss Analysis workflow

http://www.myexperiment.org/workflows/158

Using Biomart and EMBOSS soaplab services, This workflow retrieves a number of sequences from 3 species: mouse, human, rat; align them, and returns a plot of the alignment result. Corresponding sequence ids are also returned.

Previous versions of this workflow only returned sequences with an ID mapped to a MIM_morbid_accession. This was primarily to reduce the number of alignments returned becuase it is an example workflow. This option is no longer available through BioMart, so this version returns all sequences on your chosen chromosome. To reduce the number of sequences returned during testing, try changing the filter on the hsapiens_gene_ensembl to the Y chromosome, or change the base pair range.

I have also added control links before the start of createFasta. This is necessary due to a bug we discovered in the latest version of Taverna. This will be looked into soon