Group: Taverna 1.7.1 workflow workbench examples

The workflows visible from this group correspond to the examples from the Taverna 1.7.1 workflow workbench

Created at: Wednesday 05 March 2008 @ 13:45:09 (GMT)

Unique name: tavernaExamples


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Workflow

Taverna 1

Original Uploader

Workflow Example of a conditional execution workflow (v1)

Created: 05/03/08 @ 13:55:46 | Last updated: 25/03/08 @ 14:46:19

Credits: User Tomoinn

License: Creative Commons Attribution 3.0 License

Example_of_a_conditional_execution_workflow_7882_1
If the input is true then the string 'foo' is emited, if false then 'bar'. Just a simple example to show how the monster works, so to speak.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 547 times | Downloaded: 168 times

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Workflow

Taverna 1

Original Uploader

Workflow BiomartAndEMBOSSAnalysis (v3)

Created: 05/03/08 @ 14:01:18 | Last updated: 01/09/08 @ 13:57:23

License: Creative Commons Attribution 3.0 License

Biomartandembossanalysis_5833_3
Using Biomart and EMBOSS soaplab services, This workflow retrieves a number of sequences from 3 species: mouse, human, rat; align them, and returns a plot of the alignment result. Corresponding sequence ids are also returned.

Rating: 0.0 / 5 (0 ratings) | Versions: 3 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 368 times | Downloaded: 129 times

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Workflow

Taverna 1

Original Uploader

Workflow A workflow version of the EMBOSS tutorial (v1)

Created: 05/03/08 @ 14:05:21 | Last updated: 25/03/08 @ 14:43:36

Credits: User Tomoinn

License: Creative Commons Attribution 3.0 License

A_workflow_version_of_the_emboss_tutorial_32367_1
Designed to show the use of EMBOSS based Soaplab services from Taverna, this workflow has no inputs as all initial values are specified as string constants. A sequence set is fetched using the seqret tool, then simultaneously scanned for predicted transmembrane regions and subjected to a multiple alignment using emma. This alignment is then plotted to a set of PNG images and also used to build a profile using the prophecy and prophet tools.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 216 times | Downloaded: 83 times

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Workflow

Taverna 1

Original Uploader

Workflow Fetch today's xkcd comic (v1)

Created: 05/03/08 @ 14:08:53 | Last updated: 07/04/08 @ 13:54:04

Credits: User Tomoinn User Stian Soiland-Reyes

Attributions:

License: Creative Commons Attribution 3.0 License

Fetch_today_s_xkcd_comic_5577_1
Use the local java plugins and some filtering operations to fetch the comic strip image from http://xkcd.com/ Based on the FetchDailyDilbert workflow.

Rating: 4.0 / 5 (1 rating) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 218 times | Downloaded: 94 times

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Workflow

Taverna 1

Original Uploader

Workflow Fetch Dragon images from BioMoby (v2)

Created: 05/03/08 @ 14:09:37 | Last updated: 25/03/08 @ 14:42:00

Credits: User Tomoinn

License: Creative Commons Attribution 3.0 License

Fetch_dragon_images_from_biomoby_1077_2
Fetch images and annotations of snapdragons

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 140 times | Downloaded: 46 times

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Workflow

Taverna 1

Original Uploader

Workflow Demonstration of configurable iteration (v1)

Created: 05/03/08 @ 14:10:52 | Last updated: 25/03/08 @ 14:40:49

Credits: User Tomoinn

License: Creative Commons Attribution 3.0 License

Demonstration_of_configurable_iteration_12320_1
This workflow shows the use of the iteration strategy editor to ensure that only relevant combinations of inputs are used during an implicit iteration.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 137 times | Downloaded: 82 times

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Workflow

Taverna 1

Original Uploader

Workflow Retrieve sequence in EMBL format (v3)

Created: 05/03/08 @ 14:11:19 | Last updated: 17/06/09 @ 16:51:32

Credits: User Franck Tanoh User Tomoinn User Stuart Owen

License: Creative Commons Attribution 3.0 License

Retrieve_sequence_in_embl_format
This workflow retrieves a sequence associated with its features in embl format

Rating: 0.0 / 5 (0 ratings) | Versions: 3 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 173 times | Downloaded: 60 times

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Workflow

Taverna 1

Original Uploader

Workflow Fetch PDB flatfile from RCSB server (v1)

Created: 05/03/08 @ 14:13:25 | Last updated: 31/03/08 @ 16:01:42

Credits: User Tomoinn

License: Creative Commons Attribution 3.0 License

Fetch_pdb_flatfile_from_rcsb_server_27474_1
Given an identifier such as '1crn' fetches the PDB format flatfile and returns the corresponding 3D image of the protein.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 160 times | Downloaded: 61 times

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Workflow

Taverna 1

Original Uploader

Workflow GBSeq test (v2)

Created: 05/03/08 @ 14:15:36 | Last updated: 31/03/08 @ 15:55:10

Credits: User Franck Tanoh

License: Creative Commons Attribution 3.0 License

Gbseq_test_23328_2
This workflow retrieves nucleotide and protein sequences with the literature and references associated to them given a protein and a nucleotide id.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 140 times | Downloaded: 56 times

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Pack

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Pack Taverna 1.7 starter pack

Created: 17/07/08 @ 21:06:12 | Last updated: 26/06/09 @ 10:40:01

Everything to get started with Taverna 1.7 - latest version is 1.7.2

16 items in this pack

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File

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Blob Example Genbank data

Created: 25/09/08 @ 15:00:28

Credits: User Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 License

Example file containing GenBank data so that it can be used for example Taverna workflows

File type: Plain text

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Blob Example SwissProt Data

Created: 25/09/08 @ 15:09:03 | Last updated: 25/09/08 @ 15:09:04

Credits: User Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 License

Example SwissProt data to be used for Taverna examples.

File type: Plain text

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Blob Example XML file

Created: 26/09/08 @ 12:12:41 | Last updated: 26/09/08 @ 12:12:42

Credits: User Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 License

XML file to be used for example workflows

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 27 times | Downloaded: 83 times

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Blob Example XSLT file

Created: 26/09/08 @ 12:13:31 | Last updated: 26/09/08 @ 12:13:32

Credits: User Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 License

XSLT file to be used for example workflows

File type: Binary data

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 23 times | Downloaded: 78 times

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Pack

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Pack Example workflows for annotated web services

Created: 29/09/08 @ 11:57:45 | Last updated: 29/09/08 @ 11:59:09

The pack contains a number of test workflows i built when i'm annotating web services. The workflows (one or two services) have all example parameters. Cool, now you can test some web services before add them to your workflows. Do you have any workflows you built to test a service? please add them to the pack. List of myGrid annotated web services:  http://www.mygrid.org.uk/feta/mygrid/descriptions/  

1 item in this pack

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Pack

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Pack Example workflow for KEGG web service

Created: 29/09/08 @ 13:28:02 | Last updated: 29/09/08 @ 13:28:03

 The pack contains a number of test workflows for kegg web service (and operations)

14 items in this pack

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