Workflows

ELM Database Retrieval Workflow (1)

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This workflow retrieves all the current entries stored in the Eukaryotic Linear Motif (ELM) Database and returns all entries in a collated readable format. This requires the ELM Database retrieval WSDL file: http://elm.eu.org/webservice/ELMdb.wsdl

Created: 2011-07-20 | Last updated: 2011-07-20

Credits: Kieren Lythgow

Probabilistic Model Checking (PMC): plot r... (1)

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Exemplary experiment using Tav4SB (http://bioputer.mimuw.edu.pl/tav4sb/) Mathematica plotting Web service operation. This is a second-part for the computationaly exhaustive PMC: compute results workflow (http://www.myexperiment.org/workflows/2266).

Created: 2011-07-20 | Last updated: 2011-07-20

Credits: trybik

Probabilistic Model Checking (PMC): comput... (1)

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Exemplary experiment using Tav4SB (http://bioputer.mimuw.edu.pl/tav4sb/) PRISM model translation and model checking Web service operations.

Created: 2011-07-20 | Last updated: 2011-07-20

Credits: trybik

List of PSICQUIC services (names and URLs)... (1)

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PSICQUIC provides access to molecular interaction databases. This workflow queries the registry and gets a list of available PSICQUIC services (names and URLs).

Created: 2011-07-20 | Last updated: 2011-07-20

Credits: Rafael C. Jimenez

Simulate SBML-derived ODEs (2)

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Exemplary experiment using Tav4SB (http://bioputer.mimuw.edu.pl/tav4sb/) ODEs simulation and plotting Web service operations.

Created: 2011-07-20 | Last updated: 2011-07-20

Credits: trybik

PSICQUIC Registry (Molecular Interactions ... (1)

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Query the PSICQUIC registry to retrieve information about services providing molecular interactions

Created: 2011-07-20 | Last updated: 2011-07-20

Credits: Rafael C. Jimenez

Isoelectric Point (1)

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Calculates the Isoelectric Point for a protein sequence using a protein accession as input

Created: 2011-07-19 | Last updated: 2011-07-20

Credits: Rafael C. Jimenez

EBI NCBI BLAST Multi FASTA (2)

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This workflow performs multiple sequence similarity searches using the NCBI blast at the EBI. It uses the new EBI services, which are asynchronous and require looping over the nested workflow (Status) until the workflow has finished. Many of the EBI services now work in this way, so you can use this workflow as an example of the invocation pattern and looping configuration. If you want to make a blast search for more than 10 sequences I would recommend you to run the workflow using the comm...

Created: 2011-07-16 | Last updated: 2011-07-16

Credits: Rafael C. Jimenez

NOR Service (2)

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Workflow for an automatic orthorectification of raw images service, using the NOR service developed by JRC under the GENESI-DEC and GENESI-DR projects. It takes as input a URL of a zipped SPOT4|SPOT5 raw image, and generates a new URL of a zipped file of the orthorectified image.

Created: 2011-07-15 | Last updated: 2011-07-15

Credits: Panos Thomas

Secure Web service call example (1)

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This is an example of a workflow that contains a call to a secure Web service that runs behind HTTPS and requires user to authenticate. The first thing you can expect to see is a pop up dialog asking if you trust the Web service to be invoked over HTTPS. You can use testuser/testpasswd as username and password for authentication when running the workflow. To see where the security is being configured, right-click the service in the diagram and select "Configure security" from the menu.

Created: 2011-07-14 | Last updated: 2011-07-14

Credits: Alex Nenadic