myExperiment - Workflows

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Tag: bioinformatics

Wsdl: http://soap.genome.jp/KEGG.wsdl

or http://www.ebi.ac.uk/ontology-lookup/OntologyQuery.wsdl

or http://www.ebi.ac.uk/ebisearch/service.ebi?wsdl

or http://www.ebi.ac.uk/webservices/citexplore/v1.0/service?wsdl

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Taverna 1

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Hamish McWilliam

EBI_OLS_TermInfo (1)

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Get details of an ontology term given its identifer. This workflow uses the EBI's Ontology Lookup Service (OLS) to get the details of the ontology term. The OLS suports a wide range of biological and bioinformatic ontologies. See http://www.ebi.ac.uk/ontology-lookup/ for more information.

Created: 2008-07-09

Credits: Hamish McWilliam

Taverna 1

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Michael Gerlich

Retrieve Pathways and Compound information... (1)

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Given a KEGG compound identifier (e.g. cpd:C00905), this workflow queries KEGG DB for pathways and compound information for each of these compounds. As the KEGG pathway service tries to find pathways which contain all input compounds, the input list is split up to circumvent this behaviour and to search for only one compound in a pathway at a time. Compounds identified in pathways are marked as red in the resulting pathway image.

Created: 2009-03-30 | Last updated: 2009-03-30

Credits: Michael Gerlich

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