Workflows

OpenTox Get Algorithms on TUM server (6)

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Get URIs of all available algorithms on TUM server

Created: 2010-05-11 | Last updated: 2011-05-11

OpenTox Apply Model On Dataset (3)

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Apply a model to predict a dataset

Created: 2010-05-11 | Last updated: 2010-05-11

OpenTox Apply Algorithm (7)

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Apply an OpenTox algorithm

Created: 2010-05-11 | Last updated: 2011-05-11

Defining positive class with Remap Binominal (1)

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This process shows how one can use the Remap Binominal operator to define which label value is treated as the positive class.

Created: 2010-05-11

iceLogo (1)

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This example workflow creates an iceLogo

Created: 2010-05-07 | Last updated: 2010-05-07

Credits: N. Colaert

Weighted Score Tables (1)

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This process calculates a weighted score as known from SAP BW. The first operator generates data similar to that used in the links you provided. The next operator (Discretize) defines the different age groups. The next three operators map each age group to the value used for scoring. The last operator finally calculates the score and adds it as a new column to your data set.

Created: 2010-05-05

Generating Example Weights depending on label (1)

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This process uses a Generate Attribute operator for assigning new weights to examples. It uses the if condition of this operator to distinguish between labels. This can be especially useful if you have a strong bias in your class frequency, which can harm learning. Please note that you must use a learning algorithm that supports weighted examples.

Created: 2010-05-03

Uniprot Protein Visualization (1)

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Jmol 3D visualization of a protein structure.

Created: 2010-05-01 | Last updated: 2010-05-01

Genes encoded by KEGG pathway (1)

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Takes a KEGG pathway (e.g. hsa00232), finds the proteins that those genes code for and returns the sequences of those proteins.

Created: 2010-04-30 | Last updated: 2010-05-01

Get KEGG gene descriptions and pathways (1)

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This workflow takes a list of KEGG gene identifiers and supplies descriptions associated to said genes + pathways including all genes and the descriptions associated to said pathways. The list_to_string local beanshell scripts merely transform a given list into a string of unique not-null elements separated by new lines (for batch btit use). Note that the input is a real taverna list : multiple values must be declared as multiple values instead of a single string value with distinct identif...

Created: 2010-04-30 | Last updated: 2010-04-30

Credits: Nadia Cerezo Paul Fisher

Attributions: Get Kegg Gene information