All content

STUDY OF QUANTIFICATION OF IMPURITIES AND ... (1)

• Download

Created: 2012-09-16

Credits: Drkrishnasarmapathy

Filter concepts with profiles (4)

• Download

Purpose: Filter a list of concept id(s) by returning only those with a concept profile in the database.

Created: 2012-09-14 | Last updated: 2014-07-14

Credits: Kristina Hettne Reinout van Schouwen Martijn Schuemie BioSemantics

View Download

Agenda of Bonn tutorial

Created: 2012-09-14 09:51:22

Credits: Helen Hulme Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Word document

Comments: 0 | Viewed: 40 times | Downloaded: 17 times

This File has no tags!

Cloud Parallel Processing of Tandem Mass S... (1)

An advanced scientific workflow for searching LC−MS data using SpectraST on the cloud. Uploading the libraries is optimized to achieve better performance, which makes this workflow more suitable for processing mzXML spectra files from human samples, as the corresponding NIST library needed by SpectraST is larger than 2 GB. Here we connect 3 nested workflows, in which the first 2, i.e., decomposeMzxml and uploadToCloud, run in parallel, while the third nested workflow, i.e. runSpectrastO...

Created: 2012-09-10 | Last updated: 2015-08-19

Credits: Yassene

Cloud Parallel Processing of Tandem Mass S... (1)

• Download

A workflow for searching LC−MS/MS data using SpectraST on the cloud. The processor mzxmlDecomposer, pepxmlUnzip, and pepxmlComposer are identical to the one in the X!Tandem workflow (Figure 2). The only difference is that the Xtandem processor is exchanged with the Spectrast processor and the constant inputs are adjusted to SpectraST. This approach is also possible for other search engines as described in Data Decomposition and Recomposition Algorithms. More details can be found here:...

Created: 2012-09-10

Credits: Yassene

Cloud Parallel Processing of Tandem Mass S... (1)

• Download

A workflow for searching LC−MS/MS mass spectrometry data using X!Tandem on the cloud. The workflow consists of 5 processors. The objectLogic processor prepares all inputs in the right format, i.e. keeping or converting strings into file object according to the following processor. The mzxmlDecomposer and pepxmlComposer run the decomposing/recomposing algorithms. objectLogic, mzxmlDecomposer and pepxmlComposer are Beanshell processors and they run locally. Xtandem runs X!Tandem on a remo...

Created: 2012-09-10

Credits: Yassene

Detect ellipse failures and get votable wi... (1)

• Download

It detects if ellipse has failed by checking if the resulting data file exists. It adds a column (validellipse) that contains 1 if ellipse didn't fail and 0 if ellipse failed. It returns a votable that contains all the data with the new column and a votable that contains only the rows where ellipse didn't failed. It uses astrotaverna plugin (http://wf4ever.github.com/astrotaverna/).

Created: 2012-09-07

Credits: Julian Garrido

xlmPath (2)

• Download

xml path

Created: 2012-09-06 | Last updated: 2012-09-06

LASCO_CME_QUERY (2)

• Download

This workflows queries the LASCO CME list and returns a VOTable with the following fields pa, pa_width, v_final and v_diff which is abs(v_init-v_final)/2

Created: 2012-09-06 | Last updated: 2012-09-06

Credits: Baptiste Cecconi

Attributions: Extract content of columns from VOTables

Get SecchiRH composites images (1)

• Download

 This workflow extracts the composite image from the http://secchirh.obspm.fr survey page.

Created: 2012-09-06 | Last updated: 2012-09-06

Credits: Baptiste Cecconi

LASCO_CME_QUERY (1)

• Download

This workflows queries the LASCO CME list and returns a VOTable with the following fields pa, pa_width, v_final and v_diff which is abs(v_init-v_final)/2

Created: 2012-09-05

Credits: Gab Eoincar Anja Le Blanc

SNP Workflow (1)

• Download

This workflow extracts information about the position of SNPs and the genes they are associated with

Created: 2012-09-05

Credits: Vishalkpp

SNP Workflow (1)

• Download

This workflow extracts information about the position of SNPs and the genes they are associated with

Created: 2012-09-05

Credits: Aishualex

[untitled] (1)

• Download

complete part one of assignment

Created: 2012-09-05 | Last updated: 2012-09-05

Credits: Mcasfrox

View Download

Assignment Data - suggested SNPs

Created: 2012-09-05 07:20:29 | Last updated: 2012-09-05 07:22:16

Credits: Helen Hulme

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Plain text

Comments: 0 | Viewed: 41 times | Downloaded: 30 times

This File has no tags!

READ_MULTI_FASTA_FILE (1)

• Download

Read multi fasta file and split into a list of fasta sequences

Created: 2012-09-04 | Last updated: 2012-09-04

Credits: Mcasfrox

View Download

Sudoku solving with RapidMiner (Who Wants to be a Da...

Created: 2012-09-04 16:56:44 | Last updated: 2012-09-04 16:58:26

5 items in this pack

Comments: 0 | Viewed: 111 times | Downloaded: 78 times

RCOMM 2012 Sudoku Challenge: 4 - Solve Sudoku (1)

• Download

Process from the http://rcomm2012.org live data mining challenge. The task was to partially solve a Sudoku puzzle by solving three subtasks. Processes 1-3 in this pack are the actual solutions to the tasks, process 0 loads the required data into your repository and process 4 is the bonus that solves the entire puzzle. Finally, this process solves the entire Sudoku. It uses process 3 to add inferred cell values to the set of predefined values. It does so repeatedly until 81 values are defined...

Created: 2012-09-04

RCOMM 2012 Sudoku Challenge: 3 - Drop impo... (1)

• Download

Process from the http://rcomm2012.org live data mining challenge. The task was to partially solve a Sudoku puzzle by solving three subtasks. Processes 1-3 in this pack are the actual solutions to the tasks, process 0 loads the required data into your repository and process 4 is the bonus that solves the entire puzzle. IMPORTANT: Save this process as "RCOMM 2012 Sudoku Challenge: 3 - Drop impossible values (loop)" since it is included from process 4. This process uses process 2 repeatedly to ...

Created: 2012-09-04

RCOMM 2012 Sudoku Challenge: 2 - Drop impo... (1)

• Download

Process from the http://rcomm2012.org live data mining challenge. The task was to partially solve a Sudoku puzzle by solving three subtasks. Processes 1-3 in this pack are the actual solutions to the tasks, process 0 loads the required data into your repository and process 4 is the bonus that solves the entire puzzle. IMPORTANT: Save this process as "RCOMM 2012 Sudoku Challenge: 2 - Drop impossible values" since it is included from process 3. This process eliminates impossible rows from the...

Created: 2012-09-04