All content

View Download

eScience-WF-Motifs-Taverna-DataSet

Created: 2012-07-18 23:55:17

Credits: pinarpink

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Excel workbook

Comments: 0 | Viewed: 29 times | Downloaded: 16 times

This File has no tags!

View Download

Presentation - Web Observatories

Created: 2012-07-18 19:52:23 | Last updated: 2012-07-18 20:14:36

3 items in this pack

Comments: 0 | Viewed: 12 times | Downloaded: 5 times

View Download

eScience-2012-Workflow Motifs-Submission-Dataset

Created: 2012-07-18 12:36:14 | Last updated: 2012-07-18 23:58:59

3 items in this pack

Comments: 0 | Viewed: 25 times | Downloaded: 10 times

This Pack has no tags!

View Download

SALAMI Ground Truth stats

Created: 2012-07-17 17:43:32 | Last updated: 2012-07-17 17:46:46

3 items in this pack

Comments: 0 | Viewed: 23 times | Downloaded: 7 times

This Pack has no tags!

RTTS Mapper (1)

• Download

Generates RTTS counts file from SAM file. Output consists of three columns: counts at given position;chromosome;position(0 based). Workflow removes untemplated nucleotides from 5' ends of the reads. Authors: Jeppe Vinther, Lukasz Kielpinski Workflow published by lukaszkielpinski on Galaxy Jun 26, 2012 imported to myExperiment Jul 17, 2012 during demonstration of Galaxy-myExperiment integration (specifically generating SVG and showing steps of more complex workflow).

Created: 2012-07-17 | Last updated: 2012-07-17

Transform 'Stitch Gene blocks' FASTA block... (1)

• Download

Converts FASTA blocks to a FASTA file. Workflow published by galaxyproject on Galaxy Jun 27, 2012 imported to myExperiment Jul16, 2012 during demonstration of Galaxy-myExperiment integration  https://main.g2.bx.psu.edu/u/galaxyproject/w/transform-stitch-gene-blocks-fasta-blocks-to-standardized-fasta-file

Created: 2012-07-16 | Last updated: 2012-07-16

Basic Illumina Reads Quality (Functional G... (1)

• Download

From the RNA-Seq analysis tutorial during the Functional Genomics Workshop 2012 https://caps.osu.edu/pfg-workshop Workflow published by mejia-guerra on Galaxy Jun 22, 2012 imported to myExperiment Jul16, 2012 during demonstration of Galaxy-myExperiment integration

Created: 2012-07-16 | Last updated: 2012-07-16

Basic RNA-Seq Analysis - Differential Expr... (1)

• Download

From the RNA-Seq analysis tutorial during the Functional Genomics Workshop 2012 https://caps.osu.edu/pfg-workshop Workflow published by mejia-guerra on Galaxy Jun 22, 2012 imported to myExperiment Jul16, 2012 during demonstration of Galaxy-myExperiment integration  

Created: 2012-07-16 | Last updated: 2012-07-16

AnnotationTimes (1)

• Download

This very simple workflow was used in the analysis of the metadata produced by the human annotation phase of the SALAMI (Strucural Analysis of Large Amounts of Music Inforamtion) project.  The input data is the metadata available from http://ddmal.music.mcgill.ca/salami/annotations It produces a histogram of song durations and scatterplot of combined annotation time verus song duration. The fields are   SONG_ID                   Un...

Created: 2012-07-16 | Last updated: 2012-07-16

Example of how to use Sesame service and V... (1)

• Download

This workflow needs as input a list of names of galaxies. Then it queries Sesame services to get the coordinates of this galaxies, and finally with this coordinates queries a Virtual Observatory Services (a cone service).

Created: 2012-07-14

View Download

A Test File

Created: 2012-07-10 23:30:05

Credits: Jreeves

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Plain text

Comments: 0 | Viewed: 21 times | Downloaded: 7 times

This File has no tags!

View Download

Janus Provenance trace of a Gene_To_Pathway Taverna ...

Created: 2012-07-10 08:13:07

Credits: Khalid Belhajjame

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: RDF data

Comments: 0 | Viewed: 39 times | Downloaded: 17 times

This File has no tags!

View Download

OPM Provenance trace of a Gene_To_Pathway Taverna wo...

Created: 2012-07-10 08:11:43

Credits: Khalid Belhajjame

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: RDF data

Comments: 0 | Viewed: 35 times | Downloaded: 20 times

This File has no tags!

View Download

Log file of the execution of a Vistrails workflow

Created: 2012-07-10 08:08:14

Credits: Khalid Belhajjame

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 32 times | Downloaded: 16 times

This File has no tags!

Gene to Pathways (Vistrails) (1)

• Download

This is a Vistrails workflow that returns the pathways of a given gene ID. In doing so, it uses two kegg services.

Created: 2012-07-10

Credits: Khalid Belhajjame

Gene to Pathways (1)

• Download

This is a Taverna workflow that given a gene ID fetches the corespondondings pathways. To do so, the workflow make use of two KEGG web services.

Created: 2012-07-09 | Last updated: 2012-07-10

Credits: Khalid Belhajjame

View Download

Gene_To_Pathway using Taverna and Vistrails

Created: 2012-07-09 18:17:35 | Last updated: 2012-07-10 08:15:19

5 items in this pack

Comments: 0 | Viewed: 13 times | Downloaded: 7 times

This Pack has no tags!

List Concept Sets (3)

• Download

Pupose: The workflow returns a list of all Concept Set IDs currently available in the database. The Concept Sets have an hierarchical structure that can be inferred by referring to the parent Concept Set ID.

Created: 2012-07-06 | Last updated: 2014-07-14

Credits: Kristina Hettne Marco Roos Reinout van Schouwen Martijn Schuemie BioSemantics

Get concept information (5)

• Download

The workflow takes a (list of) concept ID(s) as input and returns the profile, ID, definition and name of the concept.

Created: 2012-07-06 | Last updated: 2014-07-14

Credits: Kristina Hettne Reinout van Schouwen Marco Roos Martijn Schuemie BioSemantics

Get Concept IDs (5)

• Download

Purpose: The workflow retrieves the concepts within a concept set. The Web service/workflow currently returns no values (bug).

Created: 2012-07-06 | Last updated: 2014-07-14

Credits: Kristina Hettne Reinout van Schouwen Martijn Schuemie Marco Roos BioSemantics