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Longitude with beanshell (1)

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This workflow takes in a string value or list of values and pulls out longitude coordinates formatted as ###-##(N or S) using the following regular expression: \d\d\d-\d\d(E|W). The coordinates are processed and formatted to be in the form required by the web service used in my "Elevation plot" workflow. This workflow primarily contains string manipulation. For many of the text and list services used, the beanshell script needed to be modified in order to produce the formatti...

Created: 2011-10-06 | Last updated: 2011-10-06

Credits: Chrisser

Latitude with beanshell (1)

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This workflow takes in a string value or list of values and pulls out latitude coordinates formatted as ##-##(N or S) using the following regular expression: \d\d-\d\d(N|S). The coordinates are processed and formatted to be in the form required by the web service used in my "Elevation plot" workflow. This workflow contains primarily string manipulation. For many of the text and list services used, the beanshell script needed to be modified in order to produce the formatting I requi...

Created: 2011-10-06 | Last updated: 2011-10-06

Credits: Chrisser

Elevation plot v.2 (2)

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Functionally identical to the original. I tried to upload a version with annotation, but somehow the notes didn't make it to myExperiment. From the prior verion: This workflow accepts city and country names as user-supplied input. These value are supplied to the GetWeather webservice (http://www.webservicex.net/globalweather.asmx?WSDL), which returns an XML record of location and weather info for each recognized city. (See the uploaded photo "weather example") The XML returned fr...

Created: 2011-10-06 | Last updated: 2011-10-06

Credits: Chrisser

Get Element ID from Gzipped GenBank file (1)

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This workflow gunzips a *.gbk.gz file, converts it to XML (via agavewriter) and finds the Element ID. Does not work on *.gz files larger than 10MB. I upped the JVM settings on Taverna to:         <key>VMOptions</key>         <string>-Xmx4096m -XX:MaxPermSize=1024m</string> Created my own agave.dtd to get the XPath service to work the XML file generated from the Read_GenBank_File service. You will need to ...

Created: 2011-10-06 | Last updated: 2011-10-06

Credits: Mutanthumb Alan Williams

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NCBI_Entity.mod.dtd

Created: 2011-10-06 03:51:57

Credits: Mutanthumb

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Trident (Package)

Comments: 0 | Viewed: 23 times | Downloaded: 12 times

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INSD.mod.dtd

Created: 2011-10-06 03:49:45 | Last updated: 2011-10-06 04:06:07

Credits: Mutanthumb

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Trident (Package)

Comments: 0 | Viewed: 19 times | Downloaded: 15 times

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agave.dtd

Created: 2011-10-06 03:48:27 | Last updated: 2011-10-06 04:05:28

Credits: Mutanthumb

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Trident (Package)

Comments: 0 | Viewed: 19 times | Downloaded: 12 times

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"Elevation plot..." example output

Created: 2011-10-06 03:32:17 | Last updated: 2011-10-06 03:32:19

Credits: Chrisser

License: Creative Commons Attribution 3.0 Unported License

File type: JPEG image

Comments: 0 | Viewed: 48 times | Downloaded: 30 times

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"Elevation plot..." workflow, expanded view

Created: 2011-10-06 03:29:43 | Last updated: 2011-10-06 03:29:52

Credits: Chrisser

License: Creative Commons Attribution 3.0 Unported License

File type: JPEG image

Comments: 0 | Viewed: 55 times | Downloaded: 33 times

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Workflow compact

Created: 2011-10-06 03:27:24 | Last updated: 2011-10-06 03:27:29

Credits: Chrisser

License: Creative Commons Attribution 3.0 Unported License

File type: JPEG image

Comments: 0 | Viewed: 59 times | Downloaded: 42 times

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Weather Example

Created: 2011-10-06 03:24:49 | Last updated: 2011-10-06 03:24:50

Credits: Chrisser

License: Creative Commons Attribution 3.0 Unported License

File type: JPEG image

Comments: 0 | Viewed: 48 times | Downloaded: 29 times

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TestGzippedGbk4

Created: 2011-10-06 03:21:52 | Last updated: 2011-10-06 04:00:24

Credits: Mutanthumb

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: application/x-gzip

Comments: 0 | Viewed: 31 times | Downloaded: 18 times

[untitled] (1)

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This workflow ...tbc img, #cubbies-overlay{ -moz-transition-property: margin, box-shadow, z-index; -moz-transition-duration: 0.1s; -webkit-transition-property: margin, box-shadow, z-index; -webkit-transition-duration: 0.1s; } .cubbies-selected{ z-index: 9999; box-shadow: 3px 3px 8px -1px blue !important; cursor: pointer !important; margin: -3px 3px 3px -3px; } .cubbies-selected:active{ box-shadow: 2px 2px 5px -1px darkblue !important; margin: -1px 1px 1px -1px; } #cubbies-overlay{ positio...

Created: 2011-10-06 | Last updated: 2011-10-06

Credits: Chrisser

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Find elevation given city and country names

Created: 2011-10-06 03:06:32 | Last updated: 2011-10-06 04:15:33

7 items in this pack

Comments: 0 | Viewed: 64 times | Downloaded: 31 times

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TestGzippedGbk1

Created: 2011-10-06 01:23:35

Credits: Mutanthumb

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: application/x-gzip

Comments: 0 | Viewed: 31 times | Downloaded: 19 times

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Time Series Data Library Citation Result

Created: 2011-10-05 15:41:16 | Last updated: 2011-10-05 16:00:18

Credits: Trisha Adamus

Attributions: Time Series Data Graphed and Cited

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: PNG image

Comments: 0 | Viewed: 64 times | Downloaded: 34 times

Time Series Data Graphed and Cited (1)

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This workflow uses time series data from Rob Hyndman's Time Series Data Library (TSDL) and graphs it with Google charts. It also provides the citation information with the current date. The outputs are a Google Chart and the corresponding citation information. The inputs are URL strings for two datasets provided by Rob Hyndman under the subject of Ecology. These datasets include the annual number of lynx pelts and the annual unit price of lynx pelts during the year range 1857 -1911. This...

Created: 2011-10-05 | Last updated: 2011-10-05

Credits: Trisha Adamus Alan Williams Jeff adamus

Attributions: Fetch today's xkcd comic Spreadsheed Data Import Example HTML Citation Extraction Current Date Output

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Google charts line chart result

Created: 2011-10-05 15:32:38 | Last updated: 2011-10-05 15:59:37

Credits: Trisha Adamus

Attributions: Time Series Data Graphed and Cited

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: PNG image

Comments: 0 | Viewed: 56 times | Downloaded: 30 times

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Graphing and Citing Time Series Data

Created: 2011-10-05 15:28:19 | Last updated: 2011-10-05 16:02:12

6 items in this pack

Comments: 0 | Viewed: 67 times | Downloaded: 21 times

Current Date Output (1)

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Returns the Current Date optionally Formatted by input. Free to copy and use by all!.

Created: 2011-10-05 | Last updated: 2011-10-05

Credits: Jeff adamus