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Workflow list of names of Taverna workflow contribu... (1)

Paste into http://rdf.myexperiment.org/sparql/ 

Created: 2011-03-13

Credits: User David De Roure

Workflow Phylogenetic analysis workflow (1)

This workflow provides a simple phylogenetic analysis starting from a protein query using "MrBayes" program and according to the maximum likelihood model

Created: 2011-03-12 | Last updated: 2011-03-12

Credits: User Yosr Bouhlal

Workflow DevinTheDevil (1)

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DevinTheDevil computes level populations for one or more ions of astrophysical interest using the XSTAR atomic database (uaDB).

Created: 2011-03-08

Creator

Pack This is Will's test pack


Created: 2011-03-08 04:31:38 | Last updated: 2011-03-08 04:31:39

This is a test.

0 items in this pack

Comments: 0 | Viewed: 11 times | Downloaded: 3 times

This Pack has no tags!

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Blob Automated Workflows for Accurate Mass-based Putative...

Created: 2011-03-03 15:27:04 | Last updated: 2011-03-03 15:27:07

Credits: User Marie Brown

License: Creative Commons Attribution-No Derivative Works 3.0 Unported License

Three workflows, together defined as PUTMEDID-LCMS, have been developed using the open source Taverna environment to perform putative metabolite identification based on accurate mass data acquired from liquid chromatography-electrospray mass spectrometry instruments. Three workflows perform the following steps. (Step 1) Generation of a list of pairwise peak correlations required for input to workflow 2 (workflow 1) (Step 2) Annotation of features to group different ion types of the same metab...

File type: application/x-zip-compressed

Comments: 0 | Viewed: 130 times | Downloaded: 98 times

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Workflow WPS orchestration example, image metadata ... (1)

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1 image inputs (GeoTIFF, JPEG,PNG), metadata from gdalinfo and histogram analisys, histogram result is a PNG image in base64 coding (default WPS service encoding) that will be converted to binary.

Created: 2011-03-03 | Last updated: 2011-03-03

Credits: User Jorgejesus

Workflow Converting from coordinates in longitude l... (1)

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Based on lonlat2xy.pro Converts from Helioprojective-Cartesian Coordinate System to Stonyhurst Heliographic Coordinate SystemBased on lonlat2xy.pro http://hesperia.gsfc.nasa.gov/ssw/gen/idl/solar/lonlat2xy.pro Converts from Helioprojective-Cartesian Coordinate System to Stonyhurst Heliographic Coordinate System

Created: 2011-03-02 | Last updated: 2011-03-02

Credits: User Anja Le Blanc

Workflow Rocchio (1)

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This process calculates the average values for all attributes grouped by the class (label). The resulting prototypes or centroids are then used for a nearest neighbor model which is applied again on the full data set for demonstration purposes.

Created: 2011-02-28

Workflow [untitled] (1)

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gdalinfo test

Created: 2011-02-27 | Last updated: 2011-02-27

Credits: User Jorgejesus

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Blob SVN commands for linux

Created: 2011-02-25 13:12:12 | Last updated: 2011-02-25 13:12:13

Credits: User John Brookes

License: Creative Commons Attribution-Share Alike 3.0 Unported License

SVN commands for linux - basic operation only

File type: Adobe PDF

Comments: 1 | Viewed: 17 times | Downloaded: 44 times

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Pack Taverna-eScience Central integration demo


Created: 2011-02-25 08:59:23 | Last updated: 2011-02-25 09:06:48

 Taverna workflow with embedded eSC workflow.  See here for documentation on how to make this work

2 items in this pack

Comments: 0 | Viewed: 35 times | Downloaded: 14 times

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Workflow Taverna-eScienceCentral integration demo (1)

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show how a eSC workflow can be embedded into a Taverna workflow

Created: 2011-02-25

Workflow Associate flares with active regions (1)

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This workflow is querying the HFC ActiveRegions list and HEC flare lists (names retrieved from the ontlogoy) It requires a time periode and a search radius arround the centre of an Active Region as inputs It produces two outputs: HFCout is a modified VOTable where a field per flare list is added with the number of associated flares. combined_output is a 2 dimensional list with an VOTable for each Active region and each one with an VOTable for all associated flares for that Active Region.

Created: 2011-02-22 | Last updated: 2011-08-24

Credits: User Anja Le Blanc

Attributions: Workflow Associate goes X ray flares with active regions Workflow Associate hessi flares with active regions

Workflow Associate goes X ray flares with active r... (1)

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This workflow is querying the HFC ActiveRegions list and HEC goes_xray_flare list. It requires a time periode and a search radius arround the centre of an Active Region as inputs It produces two outputs: HFCout is a modified VOTable where a field is added with the number of associated hessi flares. combined_output is a 2 dimensional list with an VOTable for each Active region and one with an VOTable for all associated flares for that Active Region.

Created: 2011-02-18 | Last updated: 2011-02-18

Credits: User Anja Le Blanc

Workflow Converting from heliocentric coordinate sy... (1)

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Converting from heliocentric coordinate system with coordinates in arcsec to coordinates in longitude latitude Based on the IDL script xy2lonlat.pro http://hesperia.gsfc.nasa.gov/ssw/gen/idl/solar/xy2lonlat.pro Stonyhurst Heliographic Coordinate System to Helioprojective-Cartesian Coordinate System

Created: 2011-02-18 | Last updated: 2011-02-18

Credits: User Anja Le Blanc

Workflow Reaction Enumeration (1)

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This workflow performs a reaction enumeration. Therefore it loads a generic reaction rxn file and two educt lists. The SD files contain the educt lists for the enumeration. The products of the enumerated reaction are stored as RXN files and also a PDF will be created which visualizes the resulting reactions.

Created: 2011-02-18 | Last updated: 2011-07-21

Workflow QSAR Descriptor Calculation Workflow (2)

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This workflow calculates QSAR properties and saves them as a CSV file. The molecules are read iteratively from a SD file. Additionally it writes out the molecules with unknown atom types, salt counter ions, curated molecule library with UUIDs and the used calculation time of every QSAR descriptor as a CSV file.Furthermore explicit hydrogens are added and a Hueckel aromaticity detection is performed.

Created: 2011-02-18 | Last updated: 2011-07-21

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Blob Trichuriasis Induced Colitis

Created: 2011-02-16 15:16:17 | Last updated: 2011-02-16 15:16:24

Credits: User Paul Fisher

Attributions: Workflow Pathways and Gene annotations for RefSeq ids Workflow KEGG pathways common to both QTL and microarray based investigations Workflow Pathways and Gene annotations for QTL region Workflow Pathway and Gene to Pubmed

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This zip file contains the results of workflow runs for: identifying genes in each of the 7 QTL regions for Trichuris muris infection; identifying genes differentially expressed in mice challenged with Trichuris muris; and Text mining results (including cosine vector scores and Term Enrichment values).

File type: Trident (Package)

Comments: 0 | Viewed: 71 times | Downloaded: 35 times

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Pack Trichuriasis induced Colitis


Created: 2011-02-16 12:49:21 | Last updated: 2011-02-16 15:26:36

This pack contains the workflows and data relating to Trichuriasis induced colitis.

5 items in this pack

Comments: 0 | Viewed: 94 times | Downloaded: 41 times

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Workflow StRAnGER Web Service Workflow (1)

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 StRAnGER is a web-based application, which performs functional analysis of high-throughput genomic datasets, starting from a list of significant genes derived from statistical and empirical thresholds, by utilizing the GO database and the KEGG pathway database as well as established statistical methods in order to relate the identified significant genes with important nodes in the GO tree structure or map those genes to over-represented metabolic pathways.

Created: 2011-02-15 | Last updated: 2011-02-15

Credits: User Elico stranger

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