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GetReactions (1)

This workflow takes an arbitrary SBML model from the BioModels database and returns a list of reactions contained in that model.

Created: 2009-05-19 | Last updated: 2009-05-19

Credits: Duncan Hull

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Supporting material for Roos et al., BMC Bioinformat...

Created: 2009-05-15 15:45:32 | Last updated: 2011-08-11 10:01:23

5 items in this pack

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simpleBLAST workflow (2)

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my first taverna workflow

Created: 2009-05-13

Credits: Shahid

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The impact of workflow tools on data-centric research

Created: 2009-05-05 23:59:48

Credits: David De Roure Carole Goble

Attributions: Pathways and Gene annotations for QTL region

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Adobe PDF

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Word file for myExperiment CCPE paper

Created: 2009-04-10 13:40:18 | Last updated: 2009-04-21 15:01:57

Credits: CCPE eScience 2008 special issue myExperiment paper co-authors

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Word document

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Get relations (1)

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This workflow gets all the realtions from a given Ondex graph

Created: 2009-02-27

Credits: Paul Fisher

Get Evidence Types (1)

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This workflow gets all the evidence types within a specified Ondex graph

Created: 2009-02-27

Credits: Paul Fisher

Get CVs (1)

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This workflow lets users retrive all controlled vocabularies for a given Ondex graph

Created: 2009-02-27

Credits: Paul Fisher

Bio2RDF: Bind fulltext search service retu... (1)

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SELECT ?s FROM <http://soap.bind.ca/wsdl/bind.wsdl> WHERE {   ?s, ?p, ?o .   FILTER ( regex(?o, "query")) . }

Created: 2009-02-19 | Last updated: 2009-02-19

Credits: Francois Belleau

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ONDEX Graph from the Yeast Jamboree SBML

Created: 2009-02-10 10:51:58 | Last updated: 2009-02-10 12:48:52

Credits: Paul Dobson

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: GNU Zip Archive

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London Roadshow PPT

Created: 2009-01-29 13:56:35

Credits: Dfmac

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: PowerPoint presentation

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Isolating the "demethylated" product of th... (1)

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Created: 2008-10-21

Credits: Danius Michaelides UsefulChem

To monitor the reaction of the imine forme... (1)

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Created: 2008-10-21

Credits: Danius Michaelides UsefulChem

Monitoring the formation of an imine (1)

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Created: 2008-10-21

Credits: Danius Michaelides UsefulChem

get_enzymes_by_compound (1)

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Retrieve all enzymes which have a link to a given compound id Input example: cpd:C00345

Created: 2008-10-08

Credits: Franck Tanoh

get_compounds_by_reaction (1)

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Retrieve all compounds which have a link to a given reaction_id Example on input: rn:R00100

Created: 2008-10-07

Credits: Franck Tanoh

get_compounds_by_pathway (1)

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Retrieves all compounds on the specified pathway Example of input: path:eco00020

Created: 2008-10-07

Credits: Franck Tanoh

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FunCUT package

Created: 2008-10-03 16:47:15 | Last updated: 2008-10-03 16:48:55

1 item in this pack

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get_best_best_neighbors_by_gene (1)

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Search the best-best neighbor of a gene in all organisms. Example of input: gene_id: eco:b0002 offset: 1 limit: 10

Created: 2008-10-02

Credits: Franck Tanoh

btit (1)

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Retrieve definitions of given database entries available on GenomeNet database. Example of input: hsa:1798 mmu:13478

Created: 2008-09-30 | Last updated: 2008-09-30

Credits: Franck Tanoh

binfo (1)

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Show the version information of a specificied database.  Example of input: "gb"  for Genbank database "sp" for swissprot database "emb" for embl database

Created: 2008-09-30 | Last updated: 2008-09-30

Credits: Franck Tanoh

bget (1)

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Retrieve database entries specified by a list of entry_id. Number of entry_id retrieves at a time is restricted up to 100 Example of input: eco:b0002 hin:tRNA-Cys-1

Created: 2008-09-29

Credits: Franck Tanoh

bfind (1)

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Used for searching entries by keywords. User needs to specify a database from those which are supported by DBGET system before keywords. List of databases available at : http://www.genome.jp/dbget/ Example of input parameter: gb E-cadherin human

Created: 2008-09-29 | Last updated: 2008-09-29

Credits: Franck Tanoh

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myExperiment Papers

Created: 2008-09-27 20:14:10 | Last updated: 2008-09-27 22:09:49

11 items in this pack

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Transform XML - explicit output file (1)

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The get_xml_file_from_web service downloads an example xml from myExperiment. The content of that file is then saved to a temporary file by create_and_populate_xml_file. The path to the temporary file is passed to the inFileURL port of Transform_XML. The get_xslt_file_from_web service downloads an example xslt file from myExperiment. The content of that file is then saved to a temporary file by create_and_populate_xslt_file. The path to the temporary file is passed to the xslFileURL port...

Created: 2008-09-27

Credits: Alan Williams