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Showing 4527 results. Use the filters on the left and the search box below to refine the results.
Taverna 2
Uploader
2820?size=60x60 Gb Kalai

Workflow Scoring small molecules for metabolite lik... (2)

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 Prerequisite:   - CDK -Taverna Plugin 0.5.1 http://www.ts-concepts.de/cdk-taverna2/plugin/ - To run this workflow the atom_signatures file of Natural product(NP), Synthetic Molecules(SM) and query structures are needed - This could be generated from GenerateAtomSignatures.t2flow http://www.myexperiment.org/workflows/2120/download?version=1   Description of input ports : NP_file: needs precomputed Atom_signatures of desired Natural product structu...

Created: 2011-05-13 | Last updated: 2012-03-18

Credits: User Kalai

RapidMiner
Uploader
2640?size=60x60 Pl Mikolaj Morzy

Workflow Algorytm EM (1)

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Proces pokazuje przypadek wykorzystania algorytmu analizy skupien dzialajacego wedlug zasady expectation maximization (EM), czyli dopasowywania rozkladow do obserwowanego zbioru danych.

Created: 2011-05-11 | Last updated: 2013-08-19

RapidMiner
Uploader
2640?size=60x60 Pl Mikolaj Morzy

Workflow Algorytm DBScan (1)

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Przeplyw ilustruje sposob wykorzystania algorytmu DBScan do znalezienia modelu skupien. Algorytm DBScan jest przykladem algorytmu bazujacego na gestosci, parametr epsilon wskazuje na promien sasiedztwa, a parametr min points wskazuje na minimalna liczbe punktow, jakie musza sie znalezc w sasiedztwie punktu aby kontynuowac rozrastanie sie skupienia.

Created: 2011-05-11 | Last updated: 2013-08-19

RapidMiner
Uploader
2640?size=60x60 Pl Mikolaj Morzy

Workflow Wybor parametru k dla algorytmu k-Means (1)

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Proces pokazuje, w jaki sposob mozna eksperymentalnie dobrac wlasciwe wartosci parametru k (liczba poszukiwanych skupien) dla algorytmow k-Means i k-Medoids. Jako miary oceny podzialu wykorzystano srednia odleglosc od centroidu oraz indeks Daviesa-Bouldina

Created: 2011-05-11 | Last updated: 2013-08-19

RapidMiner
Uploader
2640?size=60x60 Pl Mikolaj Morzy

Workflow Wybor poczatkowego podzialu dla algorytmu ... (1)

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Proces pokazuje, w jaki sposob mozna zautomatyzowac proces znajdowania najlepszego poczatkowego wyboru centroidow uniezalezniajac sie (do pewnego stopnia) od wplywu losowania.

Created: 2011-05-11 | Last updated: 2013-08-19

Taverna 2
Uploader
1253?size=60x60 Gb Anja Le Blanc

Workflow MDES simple execution (2)

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workflow to query MDES, obtaining the DES results and from it extracting the VOTable and the PNG plot for the time range queried.

Created: 2011-03-02 | Last updated: 2014-03-12

Credits: User Anja Le Blanc

Taverna 2
Uploader
1253?size=60x60 Gb Anja Le Blanc

Workflow Extract content of columns from VOTables (3)

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Extracts all values from all columns which are passed from the input ColumnNames

Created: 2011-02-24 | Last updated: 2012-08-20

Credits: User Anja Le Blanc

Taverna 2
Uploader
58?size=60x60 Simon Jupp

Workflow miRNA GFF to entrez gene (1)

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This workflow reads a GFF file of miRNA cooridinates and uses BioMart to search human ensemble genes for the gene that codes for the miRNA. The workflow returns a list of miRNAid, chromosome, start, stop, strand, entrez gene id, gene name, gene strand. Example input file here: ftp://mirbase.org/pub/mirbase/CURRENT/genomes/hsa.gff

Created: 2011-01-26 | Last updated: 2012-01-11

Taverna 2
Uploader
71?size=60x60 Nl Katy Wolstencroft

Workflow EMBL-EBI ClustalW2_SOAP (2)

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Perform a ClustalW2 alignment of protein sequences using the EMBL-EBI’s ClustalW2 (SOAP) service (see http://www.ebi.ac.uk/Tools/webservices/services/msa/clustalw2_soap). This workflow uses the new EBI services, which are asynchronous and require looping over the nested workflow (Status) until the workflow has finished. Many of the EBI services now work in this way, so you can use this workflow as an example of the invocation pattern and looping configuration.

Created: 2011-01-17 | Last updated: 2013-01-30

Credits: User Katy Wolstencroft User Hamish McWilliam

Attributions: Workflow EMBL-EBI ClustalW2 (SOAP) Workflow EBI_ClustalW2

Taverna 2
Uploader
Avatar De Andreas Truszkowski

Workflow Weka Clustering With Silhouette Analysis A... (2)

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This workflow clusters given QSAR CSV file and performs a silhouette analysis which is visualised in a PDF file. The QSAR data is loaded from a CSV file and converted into a Weka dataset. After that the data is clustered and the results are visualised in a PDF file.

Created: 2011-01-13 | Last updated: 2011-07-21

Taverna 1
Uploader
394?size=60x60 Gb Hamish McWilliam

Workflow InterProScan (SOAP) (1)

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Perform an InterProScan search using the EMBL-EBI’s InterProScan (SOAP) service (see http://www.ebi.ac.uk/Tools/webservices/services/pfa/iprscan_soap). The query sequence to use is the input, the other parameters for the search are allowed to default.

Created: 2010-12-03 | Last updated: 2013-03-28

Credits: User Hamish McWilliam

Attributions: Workflow EBI_InterProScan Workflow InterProScan (SOAP)

Taverna 2
Uploader
394?size=60x60 Gb Hamish McWilliam

Workflow InterProScan (SOAP) (1)

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Perform an InterProScan search using the EMBL-EBI’s InterProScan (SOAP) service (see http://www.ebi.ac.uk/Tools/webservices/services/pfa/iprscan_soap). The query sequence to use is the input, the other parameters for the search are allowed to default.

Created: 2010-12-03 | Last updated: 2013-03-28

Attributions: Workflow EBI_InterProScan

Taverna 1
Uploader
394?size=60x60 Gb Hamish McWilliam

Workflow NCBI BLAST (SOAP) (1)

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Perform a BLAST search using the EMBL-EBI’s NCBI BLAST (SOAP) service (see http://www.ebi.ac.uk/Tools/webservices/services/sss/ncbi_blast_soap). The query sequence, database to search and BLAST program to use are inputs, the other parameters for the search are allowed to default.

Created: 2010-11-29 | Last updated: 2013-03-28

Credits: User Hamish McWilliam

Attributions: Workflow EBI_NCBI_BLAST Workflow NCBI BLAST (SOAP)

Taverna 2
Uploader
1217?size=60x60 Gb Alan Williams

Workflow Get image URLs from HTTP document and outp... (2)

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Retrieve the web page at http://www.mygrid.org.uk, examine it for images and output the images.

Created: 2010-10-29 | Last updated: 2014-02-12

RapidMiner
Uploader
1069?size=60x60 De Sebastian land

Workflow Using Remember / Recall for "tunneling" re... (1)

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This process shows how Remeber and Recall operators can be used for passing results from one position to another position in the process, when it's impossible to make a direct connection. This process introduces another advanced RapidMiner technique: The macro handling. We have used the predefined macro a, accessed by %{a}, that gives the apply count of the operator. So we are remembering each application of the models that are generated in the learning subprocess of the Split validation. Af...

Created: 2010-04-29 | Last updated: 2012-01-16

Uploader
688?size=60x60 Us M. Kirsh
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Blob The Path of Knowledge ; The Knowledge of Path - New ...

Created: 2010-03-31 05:35:36

Credits: User M. Kirsh

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

Abstract   An unwitnessible silence is suggested to accompany all change. Conceptual paradox involving mind and matter, contrasting mind as an enduring state of the becoming of energy into a state of matter, and matter as the constantly becoming environment, is tested against criteria of witnessibility with respect to criteria for the existence of entities and phenomenon for consistency to capture an acceptably reasoned description, from a modern perspective, of cultural evolution....

File type: Adobe PDF

Comments: 0 | Viewed: 55 times | Downloaded: 42 times

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Uploader
469?size=60x60 Gb Paolo
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Blob EDBT Provenance talk presentation - PFD version

Created: 2010-03-26 14:01:00 | Last updated: 2010-03-26 14:02:09

Credits: User Paolo

License: Creative Commons Attribution-Share Alike 3.0 Unported License

PDF version -- see related pack for Native Keynote link to paper link to conference proceedings  

File type: application/unknown

Comments: 0 | Viewed: 52 times | Downloaded: 27 times

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Taverna 2
Uploader
Avatar Gb Andrew David King

Workflow Test for Orthologues (1)

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Warning: The files are hardcoded in to the beanshell of this workflow. Given an orthlog file for an organism from http://www.ebi.ac.uk/integr8/FtpSearch.do? orgProteomeId=22602, find proteins that are orthologous to proteins in another oragnsims, e.g., B.subtils. Outputs percent.

Created: 2010-03-19

Credits: Network-member Baywatch Solutions

Taverna 2
Uploader
Avatar Gb Andrew David King

Workflow Fetch Fasta and Genbank files (1)

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Fetches fasta and genbank files for a given identifier., e.g., CP000256

Created: 2010-03-19

Credits: Network-member Baywatch Solutions

Taverna 2
Uploader
Avatar Gb Andrew David King

Workflow Fetch EMBL File (1)

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Fetches an EMBL file using the EMBL id. Creates file to a specified location.

Created: 2010-03-19

Credits: Network-member Baywatch Solutions

Taverna 2
Uploader
Avatar Paul Miller

Workflow Square A List Of Numbers (1)

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Simple workflow which squares a list of numbers.

Created: 2010-03-19 | Last updated: 2010-03-19

Credits: User Paul Miller

Uploader
Avatar Architpuri
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Blob test

Created: 2010-03-08 14:43:10

Credits: User Architpuri

License: Creative Commons Attribution-Share Alike 3.0 Unported License

test

File type: Plain text

Comments: 8 | Viewed: 32 times | Downloaded: 21 times

This File has no tags!

Uploader
688?size=60x60 Us M. Kirsh
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Blob THE PATH OF KNOWLEDGE : KNOWLEDGE OF THE PATH

Created: 2010-02-22 00:21:43

Credits: User M. Kirsh

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

Abstract       The philosophies of Parmenides, Socrates, Aristotle, the science of Einstein is discussed with respect to a division of the empirical and abstracted as they refer to the universe and universals. Methodologies of the natural and anthropological sciences are contrasted  in order to discuss validity in the representation of nature. A physical model for the evolution of knowledge is presented that distinguishes both the conceptual and physical in terms of...

File type: Adobe PDF

Comments: 0 | Viewed: 68 times | Downloaded: 67 times

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688?size=60x60 Us M. Kirsh
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Blob Introduction to My Presented Works-Marvin E. Kirsh

Created: 2010-02-15 01:10:45 | Last updated: 2010-02-15 04:40:32

Credits: User M. Kirsh

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

    An introductory  background and stated approach with initial assumptions employed towards the creation of my manuscripts and ideas.  My notions reflect a naturalism,  with a slant oriented from the realism of perception, away from abstracted theory that is given its' only validity from empirical test rather than direct first person witness. I began this project as a graduate student in the biological sciences with a statement from a professor of classical g...

File type: Adobe PDF

Comments: 0 | Viewed: 49 times | Downloaded: 21 times

This File has no tags!

Uploader
688?size=60x60 Us M. Kirsh
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Blob Physical Contiguity of "The Concept" : The Concept o...

Created: 2010-02-05 03:37:55 | Last updated: 2010-02-05 19:31:11

Credits: User M. Kirsh

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

Abstract It is an entity of nature,  the human conceiver that emerges ?the concept?. It might be conjectured that in order for  a human  conceiver to conceive a concept of ?the concept?, as a subset of nature, first he must have a concept of nature with which to commence investigation into the nature of ?the  concept?.  Second,  the nature of ?the concept? might be expected to be an emergence from the individuals? concept of nature; in essence to reflect a conce...

File type: Adobe PDF

Comments: 0 | Viewed: 71 times | Downloaded: 38 times

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