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Avatar Kimmo Karhu
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Blob Community model and infrastructure for service devel...

Created: 2009-08-04 08:46:13

Credits: User Kimmo Karhu

License: Creative Commons Attribution-Noncommercial-Share Alike 3.0 Unported License

Community model and infrastructure for service development

File type: PNG image

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71?size=60x60 Nl Katy Wolstencroft
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Blob EraSysBio Summer School Taverna Tutorial

Created: 2009-07-24 21:54:27

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This tutorial is an introduction to Taverna and myExperiment

File type: application/mspowerpoint

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688?size=60x60 Us M. Kirsh
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Blob Apparency and Actuality

Created: 2009-07-19 05:24:57 | Last updated: 2009-07-19 05:29:37

Credits: User M. Kirsh

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

  Introduction   This manuscript was prepared before my introduction to theory in mythology.  My understanding of human behavior with regards to social transmision and communications past and present fell nicely into a discussion of the theory of relativity (re : "Einstein andMythology :The Lengthier the Relations in a Myth  the Greater its' Mass").  The discussion here is much bulkier but delves more into facets of biology ,...

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688?size=60x60 Us M. Kirsh
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Blob Induction, Space and Positive Ethics

Created: 2009-07-19 04:08:44 | Last updated: 2009-07-19 04:11:36

Credits: User M. Kirsh

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

One may purport that ones' awareness of space for scientific purposes comes about from a potential awareness of its' absence that is derived from times when ones attention is not focused on it. Yet simply one might extract the notion that space and entailed properties of it are elemental —i.e. conceptually non reducible and that from which all emanates. The words non-ethical induction, entailing the existence of ethical induction, if compared in a corresponding manner (to indivisible sp...

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688?size=60x60 Us M. Kirsh
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Blob Genetics Reconstrued From the Mathematics of Einstei...

Created: 2009-07-18 19:00:59 | Last updated: 2009-12-21 17:36:49

Credits: User M. Kirsh

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

A new perspective of nature is introduced based on a visit to the Plane Geometry of Euclid, The Paralle Postulate and a reinterpretation of the theory of relativity. Nature is redifined  as a special case of proximity that is different from normally construed physical proximity that is presented to perception. The world is considered as a special case in which the Laws of Motion of Newton and Special Relativity of Einstein are hopefuly united into a single frame. The science of...

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671?size=60x60 Br Rafael C. Pinto
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Blob Um Reconhecedor de Padrões Espaço-Temporais Inspir...

Created: 2009-07-16 21:31:35

Credits: User Rafael C. Pinto

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Presentation of the "A Neocortex Inspired Hierarchical Spatio-Temporal Pattern Recognition System" work, in Portuguese.

File type: application/vnd.oasis.opendocument.presentation

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671?size=60x60 Br Rafael C. Pinto
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Blob A Neocortex Inspired Hierarchical Spatio-Temporal Pa...

Created: 2009-07-16 21:26:17 | Last updated: 2009-07-18 17:33:41

Credits: User Rafael C. Pinto

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Undergraduate Thesis presented in partial fulfillment of the requirements for the degree of Bachelor of Computer Science. Abstract. Recently, inspired by our neocortex, an architecture for spatio-temporal pattern recognition has been proposed, the MPF (Memory-Prediction Framework). There already exists some attempts to implement it, like the HTM (Hierarchical Temporal Memory) and the HQSOM (Hierarchical Quilted Self-Organizing Map). The HQSOM lacks some parts of the MPF, which in turn ma...

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671?size=60x60 Br Rafael C. Pinto
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Blob LoopSOM: A Robust SOM Variant Using Self-Organizing ...

Created: 2009-07-16 21:20:54

Credits: User Rafael C. Pinto

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Paper accepted in the VIII ENIA - Encontro Nacional de Inteligência Artificial. To appear in proceedings of the XXIX CSBC - Congresso da Sociedade Brasileira de Computação. Abstract. This paper introduces feedback connections into a previously proposed model of the simple and complex neurons of the neocortex. The original model considers only feedforward connections between a SOM (Self-Organizing Map) and a RSOM (Recurrent SOM). A variant of the SOM-RSOM pair is proposed,...

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45?size=60x60 Gb David R Newman
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Blob myExperiment RDF slides for F2F 15/07/2009

Created: 2009-07-15 10:16:03 | Last updated: 2009-07-15 10:17:09

Credits: User David R Newman

License: Creative Commons Attribution-Share Alike 3.0 Unported License

These slides are an update from those given at the May 2009 myExperiment hackfest.  In particular and extra slide about linked data has been added.

File type: PowerPoint presentation

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3791?size=60x60 Gb David De Roure
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Pack Presentation - myExperiment: Towards Research Objects


Created: 2009-07-14 09:55:39 | Last updated: 2011-08-17 13:04:48

Title: myExperiment: Towards Research Objects Speaker: David De Roure Event: DReSNet Workshop on Repositories and Biological Medical Applications Event URI: http://www.dresnet.net/ Location: Manchester, UK Date: Tuesday, July 14, 2009 Formats: .ppt  

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3791?size=60x60 Gb David De Roure
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Pack Presentation - Where are we going and how are we goi...


Created: 2009-07-10 23:39:07 | Last updated: 2009-07-10 23:52:56

Title: Where are we going and how are we going to get there Speaker: David De Roure Event: JISC Projects start-up meeting Information Environment 2009-11 & Virtual Research Environment Event URI: http://www.jisc.ac.uk/whatwedo/programmes/inf11/inf11startup.aspx Location: Leicester, UK Date: Tuesday, July 7, 2009 Formats: .ppt  

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BioExtract Server
Uploader
Avatar Hbrphd

Workflow hbr (1)

abcc1 CYP2D6 CYP2E1

Created: 2009-06-29

Credits: User Hbrphd

Taverna 1
Uploader
641?size=60x60 Jelena (Obradovic) Dreskai

Workflow FirstExampleWorkflow (1)

Thumb
This is my first test example of Taverna Workflow.

Created: 2009-06-24

Credits: User Jelena (Obradovic) Dreskai

Creator
3791?size=60x60 Gb David De Roure
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Pack Presentation - Social Networking and Workflows in Re...


Created: 2009-06-09 14:18:16 | Last updated: 2009-06-09 14:24:02

Title: Social Networking and Workflows in Research Speaker: David De Roure Event: Leaping Hurdles: Planning IT Provision for Researchers Event URI: http://www.nesc.ac.uk/esi/events/974/ Location: Edinburgh, UK Date: Tuesday, June 9, 2009 Formats: .ppt Notes: this event is being held in Edinburgh and then again in London  

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3791?size=60x60 Gb David De Roure
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Pack Presentation - The Experiment that is myExperiment


Created: 2009-06-08 23:32:06 | Last updated: 2009-06-08 23:34:36

Title: The Experiment that is myExperiment Speaker: Carole Goble Event: Group 09 Event URI: http://www.group2009conference.com/ Location: Sanibel Island, Florida, USA Date: Monday, May 11, 2009 Formats: .ppt Abstract: myExperiment (http://www.myexperiment.org) is a community repository and virtual research environment that supports the sharing and reuse of scientific workflows and (increasingly) other kinds of experiment plans and methods. For researchers it provides a social infr...

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626?size=60x60 Nl Gerard Schaafsma
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Blob raven.properties file

Created: 2009-05-28 10:28:47

Credits: User Gerard Schaafsma

License: Creative Commons Attribution-Share Alike 3.0 Unported License

For those having problems starting Taverna 1, please try this. Put this file in de conf directory inside the taverna directory (where the runme.bat is), and restart Taverna.

File type: Trident (Package)

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30?size=60x60 Nl Marco Roos
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Blob New run.sh for Taverna 2 (in case of problems with n...

Created: 2009-05-28 09:25:03

Credits: User Marco Roos

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This may help solve problems with T2 snapshot.

File type: Trident (Package)

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Creator
30?size=60x60 Nl Marco Roos
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Pack AIDA remote runners


Created: 2009-05-15 16:08:03 | Last updated: 2009-05-15 16:11:20

Runners for AIDA demonstrations and testing

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Avatar Mcleodm
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Pack Soils of western Wright Valley, Antarctica


Created: 2009-04-30 23:02:49 | Last updated: 2009-04-30 23:06:43

Soil profile descriptions and photographs of Soils of western Wright Valley, Antarctica. Supports Antarctic Science paper titled Soils of western Wright Valley, Antarctica to be published shortly.

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Avatar Mcleodm
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Blob Supporting Data for Soils of western Wright Valley, ...

Created: 2009-04-30 22:42:14

Credits: User Mcleodm

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Soil profile descriptions and photographs of soils in western Wright Valley, Antarctica

File type: Word document

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510?size=60x60 Us Wei Tan
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Blob Output of the lymphoma prediction workflow (on Ubunt...

Created: 2009-04-23 20:06:51

Credits: User Wei Tan

License: Creative Commons Attribution-Share Alike 3.0 Unported License

testing on Ubuntu Linux 8.0.4 + Java 1.5_16

File type: XML

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510?size=60x60 Us Wei Tan
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Blob Output of the lymphoma prediction workflow

Created: 2009-04-23 17:37:16 | Last updated: 2011-09-03 21:56:29

Credits: User Wei Tan

Attributions: Workflow Lymphoma type prediction based on microarray data

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Output of the lymphoma prediction workflow at http://www.myexperiment.org/workflows/746?version=1. It shows the lymphoma type prediction results. It contains lymphoma type predictions for 38 samples and there is only one error (on testSample_4).

File type: XML

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510?size=60x60 Us Wei Tan
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Blob Input CQL of the lymphoma prediction workflow

Created: 2009-04-23 17:25:04 | Last updated: 2011-09-03 21:57:43

Credits: User Wei Tan

Attributions: Workflow Lymphoma type prediction based on microarray data

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Input CQL of the lymphoma prediction workflow at http://www.myexperiment.org/workflows/746?version=1. It is only for the purpose of illustration and  NOT needed to run the workflow since the input has already been embedded.

File type: XML

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3791?size=60x60 Gb David De Roure
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Blob PowerPoint figures for CCPE

Created: 2009-04-10 18:55:45 | Last updated: 2009-04-14 08:43:22

Credits: User David De Roure User Carole Goble

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Figures prepared for the submitted paper, not all used.

File type: PowerPoint presentation

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4399?size=60x60 Gb Paul Fisher
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Blob Ensembl gene report

Created: 2009-04-08 19:30:15 | Last updated: 2009-08-10 11:05:59

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file contains all genes identified in the Tir1 QTL region. Each gene is (if available) associated with an Entrez, UniProt, External Gene Id, Affymetrix probeset identifers (mouse_430_A chip), and Ensembl identifers for genes and their transcripts.

File type: Plain text

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