myExperiment - Content

Galaxy

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Christophe Antoniewski

Metavisitor: Workflow for small RNA profil... (1)

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Metavisitor, a suite of Galaxy tools for simple and rapid detection and discovery of viruses in deep sequence dataReadthedocMississippi Galaxy server

Created: 2016-10-10 | Last updated: 2016-10-10

RapidMiner

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YY HUANG

RapidMiner: Use a Macro at Detect Outliers... (1)

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a reply to @paavopdf 's question on twitter "Anyone having an idea how I can use a macro at "Detect Outliers" for the no. outliers in @RapidMiner? #rapidminer #DataScience"

Created: 2016-10-03

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ALEXANDRU MISCHIE

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Alexandru Mischie - Head-to-Head Comparison of Sirol...

Created: 2016-09-16 22:29:09

Credits: ALEXANDRU MISCHIE

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Alexandru Mischie - Head-to-Head Comparison of Sirolimus-Eluting Stent Versus Bare Metal Stent Evaluation of the Coronary Endothelial Dysfunction in the Same Patient Presenting with Multiple Coronary Artery Lesions The CREDENTIAL study

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ALEXANDRU MISCHIE

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Alexandru Mischie - Successful management of ostial ...

Created: 2016-09-16 22:26:06

Credits: ALEXANDRU MISCHIE

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Case report about ostial left main thrombus treated with systemic thrombolysis

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ALEXANDRU MISCHIE

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Alexandru Mischie - Viewpoint The ENIGMAS Trial – Wh...

Created: 2016-09-16 22:24:39

Credits: ALEXANDRU MISCHIE

License: Creative Commons Attribution-Share Alike 3.0 Unported License

I discuss here about the treatment in moderate aortic stenosis

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ALEXANDRU MISCHIE

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Alexandru Mischie - Anticoagulation in patients with...

Created: 2016-09-16 22:23:01

Credits: ALEXANDRU MISCHIE

License: Creative Commons Attribution-Share Alike 3.0 Unported License

I discus here about anticoagulation in patients with dilated cardiomyopathy, low ejection fraction and sinus rhythm.

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ALEXANDRU MISCHIE

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Alexandru Mischie - Oral sirolimus- A possible treat...

Created: 2016-09-16 22:21:35

Credits: ALEXANDRU MISCHIE

License: Creative Commons Attribution-Share Alike 3.0 Unported License

I discuss a possible treatment for refractory angina pectoris in the elderly

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Drkrish...

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5 Batch Analysis,Guidance to the manufacturer and th...

Created: 2016-09-10 09:21:16

Credits: Drkrishnasarmapathy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

~~The term ‘5 – batch analysis’ originates from the US EPA guidelines for testing of pesticides. The term is accepted now by most regulatory bodies like EEC, Indian registration authorities namely CIB & RC and other countries as well. There are no guidelines of OECD for this study. The study is essential to determine the composition of the product with respect to the active ingredient and its associated impurities.

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Galaxy

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Y. Hoogstrate

VCaP RNA-Seq Fusion gene detection with ST... (1)

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The end-to-end workflow starts by obtaining paired-end RNA-Seq data of the VCaP cell line via EGA. Galaxy determines the file type automatically with its built-in format detection system. The reads will be clipped before an alignment with STAR and STAR produces several output files that can be used for different analysis. The last tool is STAR-Fusion which was able to confirm the TMPRSS2-ERG fusion gene.

Created: 2016-08-31 | Last updated: 2016-08-31

Credits: Y. Hoogstrate

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Dr Kaveh Ostad Ali Askari

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Comparison of solution of Saint-Venant equations by ...

Created: 2016-08-21 08:17:15

Credits: Dr Kaveh Ostad Ali Askari

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The unsteady flow can be analyzed by Saint-Venant equations. These equations can be solved by characteristics and finite difference methods. The Saint-Venant equations are changed into four complete differential equations in characteristics method and these equation are solved by drawing two characteristics lines. The Saint-Venant equations are changed into a set non-linear equations and are solved using Preissman scheme in finite difference method. This set equation are changed into linear e...

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Dr Kaveh Ostad Ali Askari

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Engineering Operations Research (Linear Planning,Opt...

Created: 2016-08-21 08:13:25

Credits: Dr Kaveh Ostad Ali Askari

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Operational Research is the discipline of applying advanced analytical methods to help make better decisions.A branch of Applied Mathematics, Operational Research deals with real world problems. This requires a close collaboration among the clients (enterprises, entrepreneurs, companies, firms, organizations, etc.) who apply the advice of Operational Research, the specialists in Operational Research giving the advice, and everyone who will be influenced by the better decision. The clients may...

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Galaxy

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Juliana Pegoraro

vir-representative (1)

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Retrieve from NCBI and reduce redundancy in the viral database.

Created: 2016-08-09 | Last updated: 2016-08-09

Credits: Juliana Pegoraro

Kepler

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Sue Tairaku

Test (1)

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Test

Created: 2016-08-02

Credits: Sue Tairaku

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William Senior

CARACTERÍSTICAS GEOQUÍMICAS DE LOS SEDIMEN... (1)

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Esta investigación tuvo como objetivo, evaluar algunos parámetros geoquímicos de los sedimentos superficiales de la laguna costera La Restinga, ubicada en la Isla de Margarita, estado Nueva Esparta, Venezuela. Utilizando metodología clásica para estudios geoquímicos, se analizó la composición granulométrica y textura del sedimento, porcentaje de carbono orgánico y materia orgánica total, así como, carbonato de...

Created: 2016-08-01

Credits: William Senior

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William Senior

ASPECTOS GEOQUÍMICOS Y AMBIENTALES DE LOS ... (1)

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La presente investigación tuvo por objetivo, estudiar las características geoquímicas y las condiciones ambientales de los sedimentos del río Cuchivero, Venezuela, en función del tamaño de la partícula, materia orgánica, carbono orgánico, nitrógeno y fósforo total, carbonatos y metales pesados. La granulometría estuvo tipificada por un predominio de arenas con bajo contenido de materia orgánica (0,52-0,...

Created: 2016-08-01 | Last updated: 2016-08-01

Credits: William Senior

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William Senior

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Especiación del fósforo en sedimentos de un río trop...

Created: 2016-08-01 00:45:56

Credits: William Senior

License: Creative Commons Attribution-Share Alike 3.0 Unported License

En este estudio, se empleó una modificación del método de extracciónsedimentaria (SEDEX) para cuantificar las diferentes formas de P en lossedimentos recolectados en río Cuchivero durante marzo del año 2014. El rango devariación de las concentraciones de las diferentes formas de P respecto al P total(PTf) fueron 4,84-7,49 gP/g para la fracción F1 constituida por el Pintercambiable (P-ad) más el asociado a óxidos de hierro (...

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KNIME

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Daria Goldmann

TRPV1 Bioactivity from ChEMBLdb13 and ChEM... (1)

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This workflow allows to extract bioactivity data stored in ChEMBLdb for human TRPV1. Ensure you have installed Chembl and RDKit extensions to run the workflow.

Created: 2016-07-27 | Last updated: 2016-07-27

Credits: Daria Goldmann

KNIME

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Barbara Zdrazil

KNIME workflow without hERG labels include... (1)

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KNIME workflow used to retrieve and process data from Open PHACTS for three targets of interest (hSERT, hDAT, hERG). Further, Murcko scaffolds are computed and selectivity trends towards hSERT and hDAT can be studied. Cutt off's for separating actives/inactives are tailored to the specific target and endpoint.Requirements:- Knime v2.11- Open PHACTS Knime nodes version 1.1.0: https://github.com/openphacts/OPS-Knime- KNIME additional community nodes: 'Trusted Community Contributions (2....

Created: 2016-07-20 | Last updated: 2016-07-20

Credits: Barbara Zdrazil Open PHACTS

KNIME

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Barbara Zdrazil

KNIME workflow with hERG labels included f... (1)

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KNIME workflow used to retrieve and process data from Open PHACTS for three targets of interest (hSERT, hDAT, hERG). Further, Murcko scaffolds are computed and selectivity trends towards hSERT and hDAT can be studied. Compounds/scaffold series are flagged by their ability to also inhibit hERG.Requirements:- Knime v2.11- Open PHACTS Knime nodes version 1.1.0: https://github.com/openphacts/OPS-Knime- KNIME additional community nodes: 'Trusted Community Contributions (2.11)': EMBL-EBI No...

Created: 2016-07-20 | Last updated: 2016-07-20

Credits: Open PHACTS

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Barbara Zdrazil

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KNIME workflows from Zdrazil et al, MedChemComm, 201...

Created: 2016-07-20 06:21:03 | Last updated: 2017-06-22 13:35:07

Included are 2 KNIME workflows for data retrieval and processing:1) a KNIME workflow called "Transporter_Profiling_SERT_DAT_HERGlabel" with HERG labels included2) a KNIME workflow called "Transporter_Profiling_SERT_DAT_Ki_IC50_tailored_TH" without HERG labels

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Bioinformatics

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Rajireturn

An example BRAIN api call (1)

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An example brain API call.Note: This workflow require RServe library. Please refer to this link for the instructions to install RServer

Created: 2016-07-11 | Last updated: 2016-07-11

Credits: Rajireturn

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keshab Singha

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Telehealth Initiatives to Improve Efficiency and Qua...

Created: 2016-07-06 08:21:38

Over the past two decades, plenty of telehealth applications have been successfully implemented. Applications such as the transfer of digital photos and patient records and the use of medical video endoscopes to monitor patients’ physical examination have demonstrated great results. For many players, the introduction of telehealth in the global medical tourism market has been a profitable strategy.Telehealth improves the efficiency, customer service, and quality of medical tourism servi...

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medical tourism market

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Edwin Levinson

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Zinc deficiency induces apoptosis via mitochondrial ...

Created: 2016-06-29 08:02:03

Credits: Edwin Levinson

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Previous studies have shown that zinc deficiency leads to apoptosis of neuronal precursor cells in vivo and in vitro. In addition to the role of p53 as a nuclear transcription factor in zinc deficient cultured human neuronal precursors (NT-2), we have now identified the translocation of phosphorylated p53 to the mitochondria and p53-dependent increases in the pro-apoptotic mitochondrial protein BAX leading to a loss of mitochondrial membrane potential as demonstrated by a 25% decrease in JC-1...

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