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Showing 4527 results. Use the filters on the left and the search box below to refine the results.
Taverna 2
Uploader
Avatar Nl Davy Cats

Workflow GOgetter (no merge) (1)

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Retrieves all GO terms (with experimental evidence) associated with the given genelist. The GO terms are returned in a list per gene.

Created: 2016-06-10

Credits: User Davy Cats User Tom Rosman

Taverna 2
Uploader
Avatar Nl Tom Rosman

Workflow Get from a Pathway the Go fucntion from Kegg (1)

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This workflow gets from a Pathway nr the Go term from the Kegg database and then looks up the go function in the AMIGO database.

Created: 2016-06-10

Credits: User Tom Rosman User Davy Cats

Attributions: Workflow get the function of Go terms.

Taverna 2
Uploader
Avatar Nl Tom Rosman

Workflow get the function of Go terms. (1)

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This workflow uses the AMIGO database to get functions descriptions for Go terms.

Created: 2016-06-10

Credits: User Tom Rosman User Davy Cats

Taverna 2
Uploader
Avatar Nl Tom Rosman

Workflow Finding gene difference in pathways betwee... (1)

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Looks up the all the genes in pathways with the Kegg database between to different organismes.

Created: 2016-06-10

Credits: User Tom Rosman

Taverna 2
Uploader
Avatar Nl Tom Rosman

Workflow pathway difference in ortholog genes (1)

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This workflow looks at a set of human genes and search for the orthologs of mouse and rat. Then it gets for all the genes the pathways linked to it in Kegg and search for difference in them.

Created: 2016-06-10

Credits: User Tom Rosman User Davy Cats

Taverna 2
Uploader
Avatar Nl Davy Cats

Workflow GOgetter (2)

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Retrieves all GO terms with experimental evidence associated with the given genelist. A GO term may apear multiple times in the resulting list if it is associated with multiple genes.

Created: 2016-06-10 | Last updated: 2016-06-10

Credits: User Davy Cats User Tom Rosman

Uploader
4380?size=60x60 Fr ALEXANDRU MISCHIE
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Blob Viewpoint The ENIGMAS Trial – When Should We Treat P...

Created: 2016-05-22 20:00:09

Credits: User ALEXANDRU MISCHIE

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Viewpoint The ENIGMAS Trial – When Should We Treat Patients with Moderate Aortic Stenosis

File type: Adobe PDF

Comments: 0 | Viewed: 68 times | Downloaded: 2 times

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Uploader
4380?size=60x60 Fr ALEXANDRU MISCHIE
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Blob Anticoagulation in patients with dilated cardiomyopa...

Created: 2016-05-22 19:59:26

Credits: User ALEXANDRU MISCHIE

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Anticoagulation in patients with dilated cardiomyopathy, low ejection fraction and sinus rhythm Back to the drawing board

File type: Adobe PDF

Comments: 0 | Viewed: 333 times | Downloaded: 60 times

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Uploader
4380?size=60x60 Fr ALEXANDRU MISCHIE
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Blob Successful management of ostial left main thrombus b...

Created: 2016-05-22 19:58:52

Credits: User ALEXANDRU MISCHIE

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Successful management of ostial left main thrombus by systemic thrombolysis

File type: Adobe PDF

Comments: 0 | Viewed: 57 times | Downloaded: 6 times

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Galaxy
Uploader
4421?size=60x60 Christophe Antoniewski

Workflow Metavisitor: Workflow for Use Case 3-3 (1)

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Metavisitor, a suite of Galaxy tools for simple and rapid detection and discovery of viruses in deep sequence dataReadthedocMississippi Galaxy server

Created: 2016-05-13 | Last updated: 2016-05-13

Galaxy
Uploader
4421?size=60x60 Christophe Antoniewski

Workflow Metavisitor: Workflow for remapping in Use... (1)

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Metavisitor, a suite of Galaxy tools for simple and rapid detection and discovery of viruses in deep sequence dataReadthedocMississippi Galaxy server 

Created: 2016-05-13 | Last updated: 2016-05-13

Galaxy
Uploader
4421?size=60x60 Christophe Antoniewski

Workflow Metavisitor: Workflow for remapping in Use... (1)

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Metavisitor, a suite of Galaxy tools for simple and rapid detection and discovery of viruses in deep sequence dataReadthedocMississippi Galaxy server 

Created: 2016-05-13 | Last updated: 2016-05-13

Galaxy
Uploader
4421?size=60x60 Christophe Antoniewski

Workflow Metavisitor: Workflow for Use Case 1-4 (2)

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Metavisitor, a suite of Galaxy tools for simple and rapid detection and discovery of viruses in deep sequence dataReadthedocMississippi Galaxy server 

Created: 2016-05-13 | Last updated: 2017-04-17

Galaxy
Uploader
4421?size=60x60 Christophe Antoniewski

Workflow Metavisitor: Workflow for Use Case 1-3 (2)

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Metavisitor, a suite of Galaxy tools for simple and rapid detection and discovery of viruses in deep sequence dataReadthedocMississippi Galaxy server 

Created: 2016-05-13 | Last updated: 2017-04-17

Uploader
4438?size=60x60 Ir Dr Kaveh Ostad Ali Askari
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Blob Groundwater Hydrodynamic

Created: 2016-05-10 17:44:09

Credits: User Dr Kaveh Ostad Ali Askari

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Hydro geology (hydro- meaning water, and -geology meaning the study of the Earth) is the area of geology that deals with the distribution and movement of groundwater in the soil and rocks of the Earth's crust (commonly in aquifers). The term geo-hydrology is often used interchangeably. Some make the minor distinction between a hydrologist or engineer applying themselves to geology (geo...

File type: Adobe PDF

Comments: 0 | Viewed: 35 times | Downloaded: 3 times

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Taverna 2
Uploader
3655?size=60x60 Nl Magnus Palmblad

Workflow Author Publications and Citations by Year ... (1)

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This small workflow demonstrates how to connect to and use Europe PMC (http://europepmc.org/RestfulWebService) to count the number of publications and citations per year for one author. Two REST calls are made. First, we "searchPublications" to retrieve the bibliographic records for all published work of a single author. Then, we "getCitations" to extract the year of all articles citing the work of this author. A conditional JSONPath is here used to only look up citing articles for cited work...

Created: 2016-05-09

Credits: User Magnus Palmblad

Taverna 2
Uploader
3655?size=60x60 Nl Magnus Palmblad

Workflow Author Publications and Citations by Year ... (2)

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This small workflow demonstrates how to connect to and use Europe PMC (http://europepmc.org/RestfulWebService) to count the number of publications and citations per year for one author. Two REST calls are made. First, we "searchPublications" to retrieve the bibliographic records for all published work of a single author. Then, we "getCitations" to extract the year of all articles citing the work of this author. A conditional XPath is here used to only look up citing articles for cited work, i...

Created: 2016-05-09 | Last updated: 2016-05-09

Credits: User Magnus Palmblad

Uploader
4438?size=60x60 Ir Dr Kaveh Ostad Ali Askari
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Blob Environmental Hydraulics of Open Channel Flows

Created: 2016-05-08 07:16:42

Credits: User Dr Kaveh Ostad Ali Askari

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Hydraulics is a topic in applied science and engineering dealing with the mechanical properties of liquids or fluids. At a very basic level, hydraulics is the liquid version of pneumatic. Fluid mechanics provides the theoretical foundation for hydraulics, which focuses on the engineering uses of fluid properties. In fluid power, hydraulics are used for the generation, control, and transmission of power by the use of pressurized liquids. Hydraulic topics range through some part of science and ...

File type: Adobe PDF

Comments: 0 | Viewed: 24 times | Downloaded: 8 times

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Uploader
4438?size=60x60 Ir Dr Kaveh Ostad Ali Askari
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Blob Artificial neural network for modeling nitrate pollu...

Created: 2016-05-08 07:12:52

Credits: User Dr Kaveh Ostad Ali Askari

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Excessive use of chemical fertilizers, especially nitrogen fertilizers to increase crop and improper purification, and delivery of municipal and industrial wastewater are proposed as factors that increase the amount of nitrate in groundwater in this area. Thus, investigation of nitrate contamination as one of the most important environmental problems in groundwater is necessary. In the present study, modeling and estimation of nitrate pollution in groundwater of marginal area of Zayandeh-rood...

File type: Adobe PDF

Comments: 0 | Viewed: 60 times | Downloaded: 6 times

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Creator
Avatar Daniela Digles
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Pack Phenotypic screening annotation protocols


Created: 2016-05-06 12:02:23 | Last updated: 2016-05-06 12:03:03

This is a collection of all protocols published in Digles et al., Open PHACTS Computational Protocols for in silico Target validation of Cellular Phenotypic Screens: Knowing the Knowns, MedChemComm, submitted.The workflows require the Open PHACTS KNIME nodes (org.openphacts.utils.json_1.1.0.zip) available from https://github.com/openphacts/OPS-Knime.

3 items in this pack

Comments: 0 | Viewed: 96 times | Downloaded: 22 times

Tags:
KNIME
Uploader
Avatar Daniela Digles

Workflow Phenotypic screening annotation: protocol 6 (1)

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This workflow contains protocol 6 as published in Digles et al., Open PHACTS Computational Protocols for in silico Target validation of Cellular Phenotypic Screens: Knowing the Knowns, MedChemComm, submitted.This workflow requires the Open PHACTS KNIME nodes (org.openphacts.utils.json_1.1.0.zip) available from https://github.com/openphacts/OPS-Knime and the IUPHAR/BPS Guide to Pharmacology data file available from http://guidetopharmacology.org/DATA/interactions.csv.The workflow returns targe...

Created: 2016-05-06

Credits: User Daniela Digles Network-member Open PHACTS

KNIME
Uploader
Avatar Daniela Digles

Workflow Phenotypic screening annotation: protocol 5 (1)

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This workflow contains protocol 5 as published in Digles et al., Open PHACTS Computational Protocols for in silico Target validation of Cellular Phenotypic Screens: Knowing the Knowns, MedChemComm, submitted.This workflow requires the Open PHACTS KNIME nodes (org.openphacts.utils.json_1.1.0.zip) available from https://github.com/openphacts/OPS-Knime.This workflow shows compounds which are found both in an assay of interest (upper part of the workflow) and in kinase assays (lower part of the w...

Created: 2016-05-06

Credits: User Daniela Digles Network-member Open PHACTS

KNIME
Uploader
Avatar Daniela Digles

Workflow Phenotypic screening annotation: protocols... (1)

This workflow contains protocols 1-4 as published in Digles et al., Open PHACTS Computational Protocols for in silico Target validation of Cellular Phenotypic Screens: Knowing the Knowns, MedChemComm, submitted.This workflow requires the Open PHACTS KNIME nodes (org.openphacts.utils.json_1.1.0.zip) available from https://github.com/openphacts/OPS-Knime.Starting with a list of compound URIs (here retrieved in the metanode Protocol 0), the workflow returns ChEBI classifications for the compound...

Created: 2016-05-06 | Last updated: 2016-05-06

Credits: User Daniela Digles Network-member Open PHACTS

Taverna 2
Uploader
4374?size=60x60 Co Juan Felipe Muñoz Fernández

Workflow ASTM D2216-10 - Preliminary Workflow (1)

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ASTM D2216-10: Standard Test Methods forLaboratory Determination of Water (Moisture) Content ofSoil and Rock by Mass

Created: 2016-04-25

Credits: User Juan Felipe Muñoz Fernández

Taverna 2
Uploader
4374?size=60x60 Co Juan Felipe Muñoz Fernández

Workflow ASTM D0427-04 - Preliminary Workflow (1)

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ASTM D0427-04: Standard Test Method for Shrinkage Factors of Soils by the Mercury MethodThis a preliminary version of a ASTM D0427 Workflow. This seems like a complex workflow but it does not. A lot of services is because I'm using a basic calculator web service to do simple a math calculations (http://www.dneonline.com/calculator.asmx) This simple web service calc use only two operands to do calc in four basic operations (add, divide, multiply and substract). So it's needed intermedi...

Created: 2016-04-25

Credits: User Juan Felipe Muñoz Fernández

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