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Showing 4527 results. Use the filters on the left and the search box below to refine the results.
RapidMiner
Uploader
Avatar Jml

Workflow Store Receipts to structured information (1)

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As the title suggests, this process is a tool to transform receipts into a table sheet. The process is made for receipts that are already scanned and processed with an OCR Tool.Input: txt. FilesOutput: table with the following columns: Date, price, category, receipt index, buyer, product description  Roughly speaking this process is divided in the following steps:1.    .txt2exset: In this sub process a receipt.txt file is segmented. Every line represents one example. ...

Created: 2015-02-08 | Last updated: 2015-02-08

Creator
3791?size=60x60 Gb David De Roure
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Pack TEI materiality text alignment for Now art thou soci...


Created: 2015-02-01 14:43:21 | Last updated: 2015-02-01 15:26:30

“now art thou sociable…now art thou what thou art”: Surfacing TEI Encoding in the Bodleian First Folio’s The Tragedy of Romeo and IulietPip Willcox and David De RoureAbstractThe Bodleian First Folio project has created digital editions of the 906 pages of text from this first edition of Shakespeare’s plays. The editions are transcribed and encoded in TEI P5-conformant XML. The Bodleian First Folio’s Web interface gives the reader access to digital images o...

11 items in this pack

Comments: 0 | Viewed: 46 times | Downloaded: 4 times

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Galaxy
Uploader
Avatar Björn Grüning

Workflow Galaxy workflow for the identification of ... (1)

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This approach screens two proteins against all nucleotide sequence from the NCBI nt database within hours on our cluster, leading to all organisms with an inter- esting gene structure for further investigation. As usual in Galaxy workflows every parameter, including the proximity distance, can be changed and additional steps can be easily added. For example additional filtering to refine the initial BLAST hits, or inclusion of a third query sequence.https://github.com/bgruening/galaxytools/tr...

Created: 2015-01-25

Credits: User Björn Grüning

Bioclipse Scripting Language
Uploader
4506?size=60x60 Nl Egon Willighagen

Workflow Example SPARQL on Wikidata using the Linke... (1)

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This Bioclipse script (in Groovy) uses the Linked Data Fragments (ldf) manager that uses the LDF Java client library to run a SPARQL query on the LDF server wrapping Wikidata.

Created: 2015-01-23 | Last updated: 2015-01-23

Credits: User Egon Willighagen

Bioclipse Scripting Language
Uploader
4506?size=60x60 Nl Egon Willighagen

Workflow Groovy script to convert (part of) CGN dat... (1)

Converts CGN data from [0] to RDF. It uses intermedia TSV files (never mind the file extensions) for the data tab. The 3char ISO country codes are available at [1], but ideally these are pulled out of Wikidata directly. The RDF uses the Darwin Core ontology, QUDT, and Wikidata (on top of regular stuff). This Groovy script uses Bioclipse (www.bioclipse.net) with the RDF plugin.Menting, Frank (2015): CGN tomato passport data. figshare. http://dx.doi.org/10.608...

Created: 2015-01-22

Credits: User Egon Willighagen

Taverna 2
Uploader
3655?size=60x60 Nl Magnus Palmblad

Workflow connect to WoS Web services lite concept (1)

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This workflow is a concept for how Taverna could connect to the Thomson Reuters Web of Science (WoS) Web services lite. However, at this moment (2015-01-20), the authentication generate a session ID, but the other services (here search and closeSession) do not have an input port for this session ID. According to the documentation, this is required. The error message from the Web service also show this is missing. This workflow is "work in progress", but may nevertheless be of interest to an...

Created: 2015-01-20 | Last updated: 2015-08-19

Credits: User Magnus Palmblad User Arzu Tugce Guler User Cathelijn Waaijer

Galaxy
Uploader
Avatar Chetan Joshi

Workflow pipeline5 (1)

https://drive.google.com/a/ganitlabs.in/file/d/0B4KdY3xOOGLvY0twenNJWlVRTU0/edit?usp=sharing

Created: 2015-01-09 | Last updated: 2015-01-09

Credits: User Chetan Joshi

Taverna 2
Uploader
Avatar Nl Willemj...

Workflow OCR_NE (1)

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Takes as input an image, and extracts the NE

Created: 2015-01-06

Taverna 2
Uploader
1217?size=60x60 Gb Alan Williams

Workflow Metabolite pathway search (1)

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The workflow searches for metabolomic pathways that match the entered keywords and returns information about the chosen pathway

Created: 2014-12-18

Credits: User Alan Williams

Taverna 2
Uploader
1217?size=60x60 Gb Alan Williams

Workflow Choose_id (1)

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Make a choice based upon displayed names and return the id corresponding to the choice

Created: 2014-12-18 | Last updated: 2014-12-18

Taverna 2
Uploader
1217?size=60x60 Gb Alan Williams

Workflow Extract columns (3)

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Extracts column data from a newline and tab separated string

Created: 2014-12-18 | Last updated: 2014-12-18

Taverna 2
Uploader
Avatar Bachirb
Project Biovel

Workflow MSA-PAD Genome Mode Multiple DNA Sequence ... (1)

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BioVeL – Biodiversity Virtual e-Laboratory Workflow Documentation Name:Perform a Multiple DNA sequence alignment coding for multiple/single protein domains Capacities Programme of Framework 7: EC e-Infrastructure Programme – e-Science Environments - INFRA-2011-1.2.1 Grant Agreement No: 283359 Project Co-ordinator: Mr Alex Hardisty Project Homepage: [http://www.biovel.eu][1] [1]: http://www.biovel.eu ## 1 Description This workflow is used to submit the multip...

Created: 2014-12-05

Credits: User Bachirb User Giacinto Donvito User Pasquale Notarangelo User Saverio Vicario User Graziano Pesole User Alfonso Monaco

Taverna 2
Uploader
Avatar Bachirb
Project Biovel

Workflow MSA-PAD Gene Mode: DNA Multiple Sequence A... (1)

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BioVeL – Biodiversity Virtual e-Laboratory Workflow Documentation Name:Perform a Multiple DNA sequence alignment coding for multiple/single protein domains Capacities Programme of Framework 7: EC e-Infrastructure Programme – e-Science Environments - INFRA-2011-1.2.1 Grant Agreement No: 283359 Project Co-ordinator: Mr Alex Hardisty Project Homepage: [http://www.biovel.eu][1] [1]: http://www.biovel.eu ## 1 Description This workflow is used to submit the multip...

Created: 2014-12-05

Credits: User Bachirb User Giacinto Donvito User Pasquale Notarangelo User Saverio Vicario User Graziano Pesole User Alfonso Monaco

RapidMiner
Uploader
4262?size=60x60 De Sabrina Kirstein

Workflow Example Process using the RapidMiner Linke... (1)

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This example process uses the operator SPARQL Data Importer provided by the RapidMiner LOD Extension to receive additional data about books including the author, isbn, country, abstract, number of pages and language from dbpedia (www.dbpedia.org).

Created: 2014-12-04

RapidMiner
Uploader
4262?size=60x60 De Sabrina Kirstein

Workflow RapidMiner process created by the MLWizard... (1)

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This process was created by the MLWizard Extension. Start RapidMiner Studio, download the extension from the RapidMiner Marketplace, open the menu Tools and click on "Automatic System Construction". A wizard opens, which suggests some models which fit best to build a model from your data. You can choose the one which has the most accuracy and the wizard creates the RapidMiner process for you.

Created: 2014-12-04

RapidMiner
Uploader
4262?size=60x60 De Sabrina Kirstein

Workflow Example Process using the WHIBO Extension (1)

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This example shows simply the operator Generic decision tree of the WHIBO extension for RapidMiner Studio, which allows the creation and usage of an individual Decision Tree algorithm.

Created: 2014-12-04

RapidMiner
Uploader
4262?size=60x60 De Sabrina Kirstein

Workflow Example process of the Text and Web Mining... (1)

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This example process crawls the web (RapidMiner forum) for entries, extracts the information with the Process Documents operator and applies Clustering on the results. The process shows the interaction between the Web Mining Extension and the Text Mining Extension from RapidMiner.

Created: 2014-12-04

RapidMiner
Uploader
4262?size=60x60 De Sabrina Kirstein

Workflow Example Process RapidMiner Multimedia Mini... (1)

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This example process can be used with the Multimedia Extension (http://www.burgsys.com/) in RapidMiner Studio. It shows how to create a QR code with the extension, and how to make image transformations.

Created: 2014-12-04 | Last updated: 2014-12-04

Galaxy
Uploader
Avatar Bruno Fosso

Workflow BioMaS Illumina Workflow (1)

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BioMaS (Bioinformatic analysis of Metagenomic AmpliconS) is a bioinformatic pipeline designed to support biomolecular researchers involved in taxonomic studies of environmental microbial communities by a completely automated workflow, comprehensive of all the fundamental steps, from raw sequence data arrangement to final taxonomic identification, that are absolutely required in a typical Meta-barcoding HTS-based experiment. This BioMaS version allows the analysis of both bacterial a...

Created: 2014-11-27 | Last updated: 2014-11-27

Credits: User Pasquale Notarangelo

Taverna 2
Uploader
4080?size=60x60 Renato De Giovanni
Project Biovel

Workflow ENM resolution mix - single run version (6)

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Single run version of the workflow for comparing results of two kinds of ecological niche models: one using only low resolution layers and the other using a random mix of low and high resolution layers. Users select the study region and the environmental variables considered to be the main drivers of a virtual species niche. The workflow is all based on the ENM components, which use the openModeller Web Service (OMWS). After getting initial parameters from the user, the workflow generates a r...

Created: 2014-11-18 | Last updated: 2015-04-04

Credits: User Renato De Giovanni Network-member BioVeL

Taverna 2
Uploader
4080?size=60x60 Renato De Giovanni
Project Biovel

Workflow ENM resolution mix - multiple runs version (10)

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Multiple runs version of the workflow for comparing results of two kinds of ecological niche models: one using only low resolution layers and the other using a random mix of low and high resolution layers. Users select the study region and the environmental variables considered to be the main drivers of a virtual species niche. The workflow is all based on the ENM components, which use the openModeller Web Service (OMWS). After getting initial parameters from the user, the workflow generates ...

Created: 2014-11-13 | Last updated: 2015-05-12

Credits: User Renato De Giovanni Network-member BioVeL

Taverna 2
Uploader
4080?size=60x60 Renato De Giovanni
Project Biovel

Workflow select_random_points_based_on_threshold (2)

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Selects random presence and/or absence points given a threshold and a set of points with the corresponding model values.

Created: 2014-11-13 | Last updated: 2015-05-11

Credits: Network-member BioVeL

Taverna 2
Uploader
4080?size=60x60 Renato De Giovanni
Project Biovel

Workflow define_frequently_used_constants (3)

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Defines constants that are frequently used as parameters for ENM Components. When building a new workflow with ENM Components, some constant values will likely be used multiple times as parameters. This component conveniently defines the most frequently used constants so that users can directly connnect them to the corresponding input ports without needing to manually create each constant.

Created: 2014-11-10 | Last updated: 2015-05-11

Credits: Network-member BioVeL

Taverna 2
Uploader
3505?size=60x60 At Markus Plangg

Workflow wc - Comparative File Size (2)

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SCAPE QA Object Component. Measures the file size and comparative file size of two images.

Created: 2014-11-06 | Last updated: 2014-11-06

Credits: User Markus Plangg

Taverna 2
Uploader
3505?size=60x60 At Markus Plangg

Workflow fits - TIFF image characterisation - image... (3)

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Extracts image width, image height, file size, and validity and compression type of a tiff image.

Created: 2014-11-06 | Last updated: 2014-11-06

Credits: User Markus Plangg

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