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Showing 4527 results. Use the filters on the left and the search box below to refine the results.
Taverna 2
Uploader
Avatar Manuel Scherf

Workflow getDataPointValue by LATMOS (5)

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Workflow for Taverna based on the IMPEx-FP7 method getDataPointValue. This is a generic method which can be used to return parameters for 0D, 1D, 2D, or 3D.

Created: 2014-03-31 | Last updated: 2014-05-19

Taverna 2
Uploader
Avatar Manuel Scherf

Workflow getDataPointValue by FMI (3)

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Workflow for Taverna based on the IMPEx-FP7 method getDataPointValue. This method is used to compute values of various physical quantitites (e.g. density, magnetic field strengths etc.) for a given simulation run at a user given set of 3D points.

Created: 2014-03-31 | Last updated: 2014-05-19

Taverna 2
Uploader
Avatar Manuel Scherf

Workflow calculateCubeMercury by SINP (3)

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Workflow for Taverna based on the IMPEx-FP7 method calculateCubeMercury. This method returns the magnetic field, calculated by SINP PMM, in grid points of a cube with chosen boundaries inside the Hermean magnetosphere with chosen sampling.

Created: 2014-03-31 | Last updated: 2014-05-19

Galaxy
Uploader
2847?size=60x60 Gb hindlem

Workflow MergePeptides (1)

A example Galaxy pipeline for removing redundancy in peptides within quantitative proteomics analysis.

Created: 2014-03-31 | Last updated: 2014-03-31

Credits: User hindlem

Taverna 2
Uploader
1217?size=60x60 Gb Alan Williams

Workflow An iframe test (1)

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But this works

Created: 2014-03-28

Credits: User Alan Williams

Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Matrix Terschelling pooled data or weighted main matrix

Created: 2014-03-28 14:38:43

Credits: User Maria Paula Balcazar-Vargas User Gerard Oostermeijer

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a .txt file of a stage matrix of the species: Gentiana pneumonanthe, collected and published by Gerard Oostermeijer (Instituut voor Biodiversiteit en Ecosysteem Dynamica (IBED), Universiteit van Amsterdam).This file allow users to run the workflow: Life Table Response Experiments (LTRE)_Year Effect One Location V1 (http://www.myexperiment.org/packs/590.html)If you use the file please quote as:Oostermeijer, J.G.B. M.L. Brugman, E.R. de Boer; H.C.M. Den Nijs. 19...

File type: Plain text

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Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Matrix Terschelling 92-93

Created: 2014-03-28 14:31:44

Credits: User Maria Paula Balcazar-Vargas

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a .txt file of a stage matrix of the species: Gentiana pneumonanthe, collected and published by Gerard Oostermeijer (Instituut voor Biodiversiteit en Ecosysteem Dynamica (IBED), Universiteit van Amsterdam).This file allow users to run the workflow: Life Table Response Experiments (LTRE)_Year Effect One Location V1 (http://www.myexperiment.org/packs/590.html)If you use the file please quote as:Oostermeijer, J.G.B. M.L. Brugman, E.R. de Boer; H.C.M. Den Nijs. 19...

File type: Plain text

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Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Matrix Terschelling 91-92

Created: 2014-03-28 14:30:15

Credits: User Maria Paula Balcazar-Vargas User Gerard Oostermeijer

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a .txt file of a stage matrix of the species: Gentiana pneumonanthe, collected and published by Gerard Oostermeijer (Instituut voor Biodiversiteit en Ecosysteem Dynamica (IBED), Universiteit van Amsterdam).This file allow users to run the workflow: Life Table Response Experiments (LTRE)_Year Effect One Location V1 (http://www.myexperiment.org/packs/590.html)If you use the file please quote as:Oostermeijer, J.G.B. M.L. Brugman, E.R. de Boer; H.C.M. Den Nijs. 19...

File type: Plain text

Comments: 0 | Viewed: 62 times | Downloaded: 51 times

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Matrix Terschelling 90-91

Created: 2014-03-28 14:24:33

Credits: User Maria Paula Balcazar-Vargas User Gerard Oostermeijer

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a .txt file of a stage matrix of the species: Gentiana pneumonanthe, collected and published by Gerard Oostermeijer (Instituut voor Biodiversiteit en Ecosysteem Dynamica (IBED), Universiteit van Amsterdam).This file allow users to run the workflow: Life Table Response Experiments (LTRE)_Year Effect One Location V1 (http://www.myexperiment.org/packs/590.html)If you use the file please quote as:Oostermeijer, J.G.B. M.L. Brugman, E.R. de Boer; H.C.M. Den Nijs. 19...

File type: Plain text

Comments: 0 | Viewed: 73 times | Downloaded: 54 times

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Matrix Terschelling 87-88

Created: 2014-03-28 14:22:32

Credits: User Maria Paula Balcazar-Vargas User Gerard Oostermeijer

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a .txt file of a stage matrix of the species: Gentiana pneumonanthe, collected and published by Gerard Oostermeijer (Instituut voor Biodiversiteit en Ecosysteem Dynamica (IBED), Universiteit van Amsterdam).This file allow users to run the workflow: Life Table Response Experiments (LTRE)_Year Effect One Location V1 (http://www.myexperiment.org/packs/590.html)If you use the file please quote as:Oostermeijer, J.G.B. M.L. Brugman, E.R. de Boer; H.C.M. Den Nijs. 19...

File type: Plain text

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Taverna 2
Uploader
Avatar Manuel Scherf

Workflow calculateDataPointValueMercury by SINP (6)

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Workflow for Taverna based on the IMPEx-FP7 method calculateDataPointValueMercury. This method can be used to return the magnetic field (calculated by SINP PMM) in given points inside the Hermean magnetosphere.

Created: 2014-03-28 | Last updated: 2014-05-19

Credits: User Manuel Scherf

Taverna 2
Uploader
Avatar Manuel Scherf

Workflow calculateDataPointValue by SINP (3)

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Workflow for Taverna based on the IMPEx-FP7 method calculateDataPointValue. This method can be used to return the magnetic field (calculated by SINP PMM) in given points inside the planetary magnetosphere and in different time moments for each point.

Created: 2014-03-28 | Last updated: 2014-05-20

Taverna 2
Uploader
Avatar Manuel Scherf

Workflow calculateCube by SINP (3)

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Workflow for Taverna based on the IMPEx-FP7 method calculateCube. This calculates a 3DCube based on the paraboloid model of SINP around Earth (see http://smdc.sinp.msu.ru/index.py?nav=paraboloid/index).

Created: 2014-03-28 | Last updated: 2014-05-19

Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Pooled_matrix_file_Gentiana_LTRE

Created: 2014-03-27 10:37:46 | Last updated: 2014-08-29 13:23:06

Credits: User Maria Paula Balcazar-Vargas User Gerard Oostermeijer

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Pooled_matrix_file or weighted main Matrix - what popbio (R package) calls pooled matrix (to see more details: Horvitz, Schemske and Caswell 1997; Horvitz, and Schemske 1995). This is a matrix in a .txt format, all decimal numbers in each matrix must be indicated by dots e.g.: 0.578.To understand how to calculate a pooled matrix or a weighted main Matrix, please see: Choice of a reference matrix (pag: 253, in Horvitz, Schemske and Caswell 1997). This list of matrices will be used to perf...

File type: Plain text

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4039?size=60x60 Francisco Quevedo
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Blob TDWG Level 4

Created: 2014-03-21 16:45:54 | Last updated: 2014-03-21 16:46:10

Credits: User Francisco Quevedo

License: Creative Commons Attribution-Share Alike 3.0 Unported License

TDWG Level 4

File type: ZIP archive

Comments: 0 | Viewed: 19 times | Downloaded: 9 times

This File has no tags!

Taverna 2
Uploader
4080?size=60x60 Renato De Giovanni
Project Biovel

Workflow sample_points (11)

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Randomly samples a specified number of absence and/or presence points in a given environment (set of layers + mask).

Created: 2014-03-19 | Last updated: 2015-05-11

Credits: Network-member BioVeL

RapidMiner
Uploader
4078?size=60x60 De Heikopa...

Workflow Finding wrong links in Linked Open Data wi... (1)

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This simple workflow shows how to detect wrong links in Linked Open Data. It uses operators from the Linked Open Data and the Anomaly Detection extensions. The process first reads a list of links from the EventMedia endpoint, linking to DBpedia, then creates feature vectors for each of those links. Finally, an outlier detection operator is employed to find suspicious links.

Created: 2014-03-14

Taverna 2
Uploader
2577?size=60x60 Ie David PS

Workflow XPath From VOTable (1)

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A XPath From text version for VOTables. This is useful to extract certain information from the header of the VOTables but it could work for any XPath.

Created: 2014-03-12

Credits: User David PS User Anja Le Blanc

Attributions: Workflow Extracting data from VOTable format by using XPath query

Taverna 2
Uploader
Avatar Amrish Mahes

Workflow test_workflow (2)

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test_upload

Created: 2014-03-10 | Last updated: 2014-03-10

Taverna 2
Uploader
1217?size=60x60 Gb Alan Williams

Workflow Hello World (1)

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One of the simplest workflows possible. No workflow input ports, a single workflow output port "greeting", outputting "Hello, world!" as produced by the String Constant "hello".

Created: 2014-03-06

Taverna 2
Uploader
1405?size=60x60 At Sven

Workflow ARC2WARC Hadoop Job (1)

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Just a wrapper workflow for a Hadoop job converting ARC to WARC files.

Created: 2014-03-06

Credits: User Sven

Galaxy
Uploader
4192?size=60x60 Fr Ylebras

Workflow NGS : Tuto SNP detection workflow single end (1)

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Generate pileup, Unify Genotypers and create a VCF file from FastQ files of two individuals

Created: 2014-03-05 | Last updated: 2014-06-10

Credits: User Ylebras

Galaxy
Uploader
4192?size=60x60 Fr Ylebras

Workflow NGS RAD : Population Genomics on RAD data ... (1)

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Analyse clean population fastQ files (coming from Stacks : Process Radtag tool for example) without a reference genome and population information

Created: 2014-03-05

Galaxy
Uploader
4192?size=60x60 Fr Ylebras

Workflow NGS RAD : Population Genomics on RAD data ... (1)

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Analyse clean population SAM files (coming from alignment of FastQ from Stacks : Process Radtag tool for example) with a reference genome and population information

Created: 2014-03-05 | Last updated: 2014-06-10

Credits: User Ylebras

Galaxy
Uploader
4192?size=60x60 Fr Ylebras

Workflow NGS : Group and filter mapped reads (1)

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Filter and group reads from a mapping Bam file

Created: 2014-03-05 | Last updated: 2014-06-10

Credits: User Ylebras

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