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Blob Optimized Local Protein Structure with Support Vecto...

Created: 2013-05-12 03:35:39

Credits: User Mohd Saberi

License: Creative Commons Attribution-Share Alike 3.0 Unported License

C.Y. Fai, R. Hassan, M. S. Mohamad. Communications in Computer and Information Science. Vol. 295, pp. 333-342. Springer-Verlag Berlin / Heidelberg. 2012. ISBN: 978-3-642-32825-1. Indexed by SCOPUS.

File type: Adobe PDF

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Blob Optimized Local Protein Structure with Support Vecto...

Created: 2013-05-12 03:34:57

Credits: User Mohd Saberi

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 C.Y. Fai, R. Hassan, M. S. Mohamad. Communications in Computer and Information Science. Vol. 295, pp. 333-342. Springer-Verlag Berlin / Heidelberg. 2012. ISBN: 978-3-642-32825-1. Indexed by SCOPUS.

File type: Adobe PDF

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Blob A New Hybrid Firefly Algorithm for Complex and Nonli...

Created: 2013-05-12 03:33:41

Credits: User Mohd Saberi

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A.Abdullah, S. Deris, M. S. Mohamad, S.Z.M. Hashim.  Advances in Intelligent and Soft Computing. Vol. 151, pp. 673-680. Springer-Verlag Berlin / Heidelberg. 2012. ISBN: 978-3-642-28764-0. Indexed by ISI and SCOPUS.

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Blob Reconstructing Metabolic Networks - A Review. Advanc...

Created: 2013-05-12 03:31:42

Credits: User Mohd Saberi

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Y.W. Choon, M.S. Mohamad.  Vol. 1, pp. 26-40. UTM Press. 2011. ISBN: 978-983-52-0822-5.

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Blob Automation of DNA Computing Readout Method Based on...

Created: 2013-05-12 03:29:28

Credits: User Mohd Saberi

License: Creative Commons Attribution-Share Alike 3.0 Unported License

M.F.M. Saaid, S. Sudin, I. Ibrahim, Z.M. Yusof, K. Khalil, J.A.A. Mukred, M.S. Mohamad, N. Mokhtar, Z. Ibrahim, J. Watada. (2012). International Journal of Innovative Computing, Information and Control. Vol. 8, No. 3(A), pp. 1907-1916. ICIC International. Indexed by ISI and SCOPUS.

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Blob An Improved Swarm Optimization for Parameter Estima...

Created: 2013-05-12 03:27:02

Credits: User Mohd Saberi

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A. Abdullah, S. Deris, M.S. Mohamad, S. Anwar. (2013). PLoS ONE, Vol. 8, No. 4, pp. e61258. PLoS. Indexed by ISI and SCOPUS.

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Blob Validation of Hierarchical Gene Clusters Using Repea...

Created: 2013-05-12 03:24:34

Credits: User Mohd Saberi

License: Creative Commons Attribution-Share Alike 3.0 Unported License

L.F. Tee, M.S. Mohamad, S. Deris, A.A.M. Faudzi, M.S.A. Latiff, R. Sallehuddin. (2013). Jurnal Teknologi. Vol. 6. No. 1, pp. 7-12. UTM Press. Index by Scopus. 

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Blob Validation of Hierarchical Gene Clusters Using Repea...

Created: 2013-05-12 03:22:20

Credits: User Mohd Saberi

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 L.F. Tee, M.S. Mohamad, S. Deris, A.A.M. Faudzi, M.S.A. Latiff, R. Sallehuddin. (2013). Jurnal Teknologi. Vol. 6. No. 1, pp. 7-12. UTM Press. Index by Scopus. 

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Blob A Review of Computational Approaches for In Silico M...

Created: 2013-05-12 03:20:56

Credits: User Mohd Saberi

License: Creative Commons Attribution-Share Alike 3.0 Unported License

W. H. Chan, M. S. Mohamad, S. Deris and R. M. Illias.  (2013). Current Bioinformatics. Vol. 8, No. 2, pp. 253-258. Bentham Science Publishers. Indexed by ISI and SCOPUS.

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Blob A New Hybrid Bee Evolution Algorithm for parameter E...

Created: 2013-05-12 03:18:27

Credits: User Mohd Saberi

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A. Abdullah, S. Deris, M.S Mohamad. (2013) ICIC Express Letter Part B: Application, Vol 4 (1), p. 1-6. ICIC International.

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Blob ScientificModules

Created: 2013-05-10 14:08:43

Credits: User Khalid Belhajjame

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file contains the list of scientific modules that I have used in my experiments.

File type: text/csv

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Project Biovel

Pack Analysis of environmental sequences


Created: 2013-05-07 09:07:57 | Last updated: 2013-05-07 12:14:57

The pack should allow to analysis the differentiation across groups of samples of biological sequence

2 items in this pack

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Creator

Pack Pack with versions and relationships


Created: 2013-05-02 08:35:29 | Last updated: 2013-05-02 08:40:06

This is a pack to demonstrate both versions (snapshots) and relationships between pack entries.

3 items in this pack

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Workflow Retrieve object properties from NED and VO... (4)

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From an initial list of galaxy names, retrieve some of their properties from Virtual Observatory archives and services (NASA Extragalactic Database NED), and calculate others like Distance, based on the ones previously obtained (e.g. recession velocity, equatorial and galactic coordinates). The sample is filtered in a later step with criteria related to the angular size of the object and its declination. The goal is to build a sample of objects and their properties with up-to-date physical in...

Created: 2013-04-25 | Last updated: 2013-06-27

Workflow Perform Multi-SSA queries to an Spectral V... (2)

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Snippet showing how to use AstroTaverna "VO service perspective" and other tools for performing Multi-SSA queries to Spectral VO Services. The input is a VOTable with a list of source names and coordinates to perform the multi-query. Add_n_concat_tables tool is used to concatenate the list of responses issued from the multiquery. The result is a VOTable that may be renderized properly in the perspective Results, choosing Value Type as VOTable. It may also be sent via SAMP to other VO soft im...

Created: 2013-04-23 | Last updated: 2013-04-23

Blob VOTable of AMIGA Galaxies

Created: 2013-04-23 16:12:52

Credits: User Jose Enrique Ruiz

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This VOTable is provided by Vizier Service with ref: J_A+A_540_A47_table1 - AMIGA X: The AMIGA sample of isolated galaxies X. A First Look at Isolated Galaxy Colors. Fernandez Lorenzo et al. 2012

File type: Trident (Package)

Comments: 0 | Viewed: 68 times | Downloaded: 32 times

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Workflow Retrieve the best position from an object ... (2)

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Snippet showing how to use Taverna REST Service tool for performing a query to a standard REST Service. In this particular case, the query is performed against NED_basic_posn REST Service from NASA Extragalactic Database (NED) Archive for the object M51. The result is a VOTable that may be renderized properly in the perspective Results, choosing Value Type as VOTable. More info on NED Web Serces: http://adsabs.harvard.edu/abs/2007ASPC..382..165M

Created: 2013-04-23 | Last updated: 2013-04-23

Credits: User Jose Enrique Ruiz

Workflow Perform a SSA query to a Spectral VO Service (1)

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Snippet showing how to use AstroTaverna "VO service perspective" for performing SSA queries on Spectral VO Services. The result is a VOTable that may be renderized properly in the perspective Results, choosing Value Type as VOTable. In this particular case the Spectral Service queried is the Galexy Evolution Explorer (GALEX) SSA Service, with coordinates RA, DEC of 25, 22 and 1 degree in size.

Created: 2013-04-23

Credits: User Jose Enrique Ruiz

Workflow Perform Multi-SIA queries to an Image VO S... (2)

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Snippet showing how to use AstroTaverna "VO service perspective" and other tools for performing Multi-SIA queries to Image VO Services. The input is a VOTable with a list of source names and coordinates to perform the multi-query. Add_n_concat_tables tool is used to concatenate the list of responses issued from the multiquery. The result is a VOTable that may be renderized properly in the perspective Results, choosing Value Type as VOTable. It may also be sent via SAMP to other VO soft imple...

Created: 2013-04-23 | Last updated: 2013-04-23

Credits: User Jose Enrique Ruiz

Workflow Perform a SIA query to an Image VO Service (1)

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Snippet showing how to use AstroTaverna "VO service perspective" for performing SIA queries on Image VO Services. The result is a VOTable that may be renderized properly in the perspective Results, choosing Value Type as VOTable. In this particular case the Image Service queried is the Infrared Space Observatory (ISO) Data Archive SIAP Service, with coordinates RA, DEC of 30, 30 and 10 degrees in size.

Created: 2013-04-23

Credits: User Jose Enrique Ruiz

Workflow Retrieve Bibliography from NED (1)

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This is a smal workflow that retrieves bibliography from Literature NED Web Service http://ned.ipac.caltech.edu/forms/SearchRefsByObjectName.html The input is a list of source names and the output is a VOTable with the info provided by NED, plus an extra column with the link pointing to the bliography in the NED website. This VOTable may be sent to Topcat via SAMP and the content of the "Link column" used as an action to display the website content in a browser when clicked. Note that the o...

Created: 2013-04-23

Credits: User Jose Enrique Ruiz

Workflow Perform Multi-ConeSearch queries to a VO S... (1)

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Snippet showing how to use AstroTaverna "VO service perspective" and other tools for performing Multi-ConeSearch queries to a VO Services. The input is a VOTable with a list of source names and coordinates to perform the multi-query. Please *note how the AMIGACS block list handling is cofigured* with right click -> Configure running -> List Handling. Add_n_concat_tables tool is used to concatenate the list of responses issued from the multiquery. The result is a VOTable that may be renderiz...

Created: 2013-04-22

Workflow Perform a ConeSearch query to a VO Service (2)

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Snippet showing how to use AstroTaverna "VO service perspective" for performing ConeSearch queries on VO Services. The result is a VOTable that may be renderized properly in the perspective Results, coosing Value Type as VOTable.

Created: 2013-04-22 | Last updated: 2013-04-22

Workflow Use of temporary files to execute local to... (1)

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Snippet showing how to use AstroTaverna tool "Fill template from VOTable" for creating temporary files filling a template provided by the user. The input is two templates a one VOTable with information on where to store files created from filling the templates. The VOTable also contains data values to fill the templates. This snippet is particularly useful when a local tool needs different configuration files when looping through different executions.

Created: 2013-04-22

Workflow Add a common row to a VOTable (1)

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Snippet showing how to use AstroTaverna tool for adding a common row to a whole VOTable. The input are two VOTable, the main one has a lis of sources and coordinates, to which is appended a common row "Object Type" with common values "Messier Object". Right click on tool may change configuration to append the common row to left or right side of main VOTable.

Created: 2013-04-22

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