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Taverna 2
Uploader
2942?size=60x60 At Roman

Workflow AIT Matchbox Scenario Check Duplicate Pair... (1)

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In this scenario matchbox will check duplicate pair of previously found duplicates in passed digital collection if output information was lost. The pair check does not require the time consumpting whole analysis and is very fast. Matchbox in this scenario is installed on remote Linux VM. Digital collection is stored on Windows machine.

Created: 2012-11-24

Credits: User Roman Network-member SCAPE

Taverna 2
Uploader
2942?size=60x60 At Roman

Workflow AIT Matchbox Scenario Find Duplicates usin... (1)

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In this scenario matchbox will find duplicates in passed digital collection. All matchbox workflow steps are defined separately using input parameter sequence: clean, extract, train, bowhist and compare. User will get a list of duplicates in result. Matchbox in this scenario is installed on remote Linux VM. Digital collection is stored on Windows machine.

Created: 2012-11-24

Credits: User Roman Network-member SCAPE

Taverna 2
Uploader
2942?size=60x60 At Roman

Workflow AIT Matchbox Scenario Professional (3)

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In this scenario matchbox will find duplicates in passed digital collection. Each matchbox workflow step can be executed separately. User will get a list of duplicates in result. Matchbox in this scenario is installed on remote Linux VM. Digital collection is stored on Windows machine. This workflow starts duplicate finding process using the FindDuplicates python script of the matchbox tool. Matchbox tool support python in version 2.7. Execution starts from the directory where python scripts ...

Created: 2012-11-24 | Last updated: 2012-11-24

Credits: User Roman Network-member SCAPE

Taverna 2
Uploader
2942?size=60x60 At Roman

Workflow AIT Matchbox Scenario All (1)

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In this scenario matchbox will find duplicates in passed digital collection. All matchbox workflow steps are executed automatically in one turn. User will get a list of duplicates in result. Matchbox in this scenario is installed on remote Linux VM. Digital collection is stored on Windows machine.

Created: 2012-11-24 | Last updated: 2012-11-24

Credits: User Roman Network-member SCAPE

Taverna 2
Uploader
2577?size=60x60 Ie David PS

Workflow Finding the origins of Solar Wind events a... (6)

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This gives a comprenhensive overview of high speed solar wind events (CME or CIR) seen at Eart, by obtaining the maximum in-situ measure velocity from the data evaluation service (DES), propagating the even backwards to Earth using the HELIO processing service (HPS) and SHEBA propagation model, and search whether halo CMEs or CHs were observed on that time, and retrieves, besides all the previous information, a context solar wind plot (+/- 1 day) and a URL linking to a context movie for CMEs...

Created: 2012-11-16 | Last updated: 2013-03-21

Credits: User David PS

Attributions: Workflow CME backwards propagation Workflow Co-rotating Interaction Regions backwards propagation Workflow HFC Synoptic map from date Workflow CDAW CME movie from date Workflow Solar Wind properties and plot Workflow Back CIR-CME propagation model Workflow LASCO_CME_QUERY

Creator
3791?size=60x60 Gb David De Roure
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Pack Presentation - End-to-End Semantics


Created: 2012-11-12 15:28:38 | Last updated: 2012-11-13 00:35:30

Keynote talk by David De Roure at SSN workshop at ISWC 2012, Boston, 12 November 2012 In many respects the music industry has gone digital "end-to-end", with success stories in Semantic Web adoption. Science too is dealing with a "digital turn" and the R&D community is active with Semantic Web.  Meanwhile the Semantic Sensor Network workshop series has demonstrated the applicability of Semantic Web approaches in the sensor network domain. Looking to the future,...

4 items in this pack

Comments: 0 | Viewed: 28 times | Downloaded: 5 times

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Taverna 2
Uploader
71?size=60x60 Nl Katy Wolstencroft

Workflow ImportRefSeqtoKegg (3)

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This workflow extracts a column of RefSeq gene IDs from a CSV file and then converts them to Kegg gene identifiers. This workflow uses the new KEGG REST service, which replaces the old SOAP interface from 31st December 2012

Created: 2012-11-12 | Last updated: 2013-01-08

Credits: User Katy Wolstencroft

Creator
3791?size=60x60 Gb David De Roure
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Pack Presentation - Knowledge Infrastructure for Global S...


Created: 2012-11-10 07:47:48 | Last updated: 2012-11-10 09:04:05

 Presentation at the First Open Global Systems Science Conference, Brussels, 8-10 November 2012 http://www.gsdp.eu/nc/news/news/date/2012/10/31/first-open-global-systems-science-conference/ Related blog post http://global-systems-science.eu/?p=272

3 items in this pack

Comments: 0 | Viewed: 257 times | Downloaded: 5 times

This Pack has no tags!

RapidMiner
Uploader
4010?size=60x60 Jedrzej Potoniec

Workflow Metamining: Create classifiers (1)

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 Uses mined patterns to learn rule model for metamining purposes.

Created: 2012-11-06 | Last updated: 2012-11-06

RapidMiner
Uploader
4010?size=60x60 Jedrzej Potoniec

Workflow Split data for cross-validation (1)

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 Splits given dataset into 10 folds almost equal in size using stratified sampling.

Created: 2012-11-06 | Last updated: 2012-11-06

RapidMiner
Uploader
4010?size=60x60 Jedrzej Potoniec

Workflow Metamining: mine patterns (1)

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 Workflow to be used for mining patterns with Fr-ONT-Qu in dataset using DMOP vocabulary.

Created: 2012-11-06 | Last updated: 2012-11-06

Uploader
3377?size=60x60 Gb Jon Giddy
Project Biovel
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Blob Matrix Population Modelling documentation

Created: 2012-11-05 16:32:34 | Last updated: 2012-11-07 09:01:58

Credits: User Jon Giddy User Maria Paula Balcazar-Vargas User Gerard Oostermeijer

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This document describes the Matrix Population Modelling workflow, and includes a tutorial on its use.

File type: Adobe PDF

Comments: 0 | Viewed: 121 times | Downloaded: 102 times

This File has no tags!

Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Bootstrap of observed census transitions. (3)

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This workflow calculates bootstrap distributions of population growth rates (?), stage vectors, and projection matrix elements by randomly sampling with replacement from a stage-fate data frame of observed transitions. The goal of a demographic analysis is very often to estimate lambda, because lambda is estimated from imperfect data, such estimation are uncertain. Therefore, when the results have policy implications it is important to quantify that uncertainty. Confidence interval is one of ...

Created: 2012-11-05 | Last updated: 2014-07-24

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Matrix Population Model construction and analysis v20 Blob Stage Matrix of Gentiana pneumonanthe 1987-88

Taverna 2
Uploader
2577?size=60x60 Ie David PS

Workflow CDAW CME movie from date (1)

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generates the url for the input date to visualize CMEs and GOES xray light curve produced by CDAW at GSFC

Created: 2012-11-05

Credits: User David PS

Attributions: Workflow HFC Synoptic map from date

Taverna 2
Uploader
2577?size=60x60 Ie David PS

Workflow HFC Synoptic map from date (1)

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query the HELIO Feature Catalogue, and retrieves the image with all the features catalgued for certain date.

Created: 2012-11-05

Credits: User David PS

Taverna 2
Uploader
3190?size=60x60 Dk Bolette Jurik

Workflow Mp3 To Wav Migrate QA CLI List Test (4)

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Migrates Mp3 files from input List to Wav files and performs QA. The QA steps include File Format Validation, Significant Property Comparison and migrationQA file content comparison (all CLI). As this is a Test workflow, the (very large) Wav files are deleted, and only the QA results and log files are saved for analysis. This workflow matches solution SO4 on the SCAPE opf wiki, see http://wiki.opf-labs.org/display/SP/SO4+Audio+mp3+to+wav+Migration+and+QA+Workflow

Created: 2012-11-05 | Last updated: 2012-11-13

Credits: User Bolette Jurik

Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Demographic data Gentiana pneumonanthe 1987-1988 fro...

Created: 2012-11-05 09:47:37 | Last updated: 2013-08-13 12:06:34

Credits: User Maria Paula Balcazar-Vargas User Gerard Oostermeijer

Attributions: Workflow Creation of a stage matrix model from demographic monitoring of individuals in an animal or plant population Workflow Matrix Population Model construction and analysis v20

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a .txt file of one year demographic data of the species: Gentiana pneumonanthe, collected and published by Gerard Oostermeijer (Instituut voor Biodiversiteit en Ecosysteem Dynamica (IBED), Universiteit van Amsterdam).This file allow users to run the workflow Creation of a stage matrix model from demographic monitoring of individuals in an animal or plant population (http://www.myexperiment.org/workflows/3276.html) or Matrix Population Model construction and analysi...

File type: Plain text

Comments: 0 | Viewed: 78 times | Downloaded: 35 times

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Uploader
Avatar Cherian Mathew
Project Biovel
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Blob Data Refinement Workflow Documentaion

Created: 2012-11-02 17:42:05 | Last updated: 2012-11-07 08:47:24

Credits: User Cherian Mathew

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 This document provides comprehensive information about the Data Refinement Workflow.

File type: Adobe PDF

Comments: 0 | Viewed: 92 times | Downloaded: 61 times

Tags:
Uploader
Avatar Cherian Mathew
Project Biovel
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Blob Sample Input for Data Refinement Workflow

Created: 2012-11-02 16:10:54 | Last updated: 2012-11-07 08:48:11

Credits: User Cherian Mathew

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 This file is a sample input file for the Data Refinement Workflow. It is also the input file used in the tutorial section of the documentation.

File type: Plain text

Comments: 0 | Viewed: 51 times | Downloaded: 37 times

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Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Net reproductive rate (Ro) (2)

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This workflow calculates the net reproductive rate (Ro) that is mean number of offspring by which a newborn individual will be replaced by the end of its life, and thus the rate by which the population increases from one generation to the next (Caswell, 2001) =============================================================== This workflow has been created by the Biodiversity Virtual e-Laboratory (BioVeL http://www.biovel.eu/) project. BioVeL is funded by the EU’s Seventh Framework Program, gr...

Created: 2012-11-02 | Last updated: 2014-07-25

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Matrix Population Model construction and analysis v20 Workflow Matrix Population Model analysis v12 Blob Stage Matrix of Gentiana pneumonanthe 1987-88

Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Generation time (T) (2)

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The time T required for the population to increase by a factor of Ro (net reproductive rate) e.g.: If Ro (net reproductive rate) = 5.56 and T (generation time) = 8.055 The average plant of the species Gentiana pneumonanthe in Terschelling in the year 1987 replaced itself with almost six new plants and took approximately 8.05 years to do so. ========================================================= This workflow has been created by the Biodiversity Virtual e-Laboratory (BioVeL http://www.bio...

Created: 2012-11-02 | Last updated: 2014-07-25

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Matrix Population Model construction and analysis v20 Workflow Matrix Population Model analysis v12 Blob Stage Matrix of Gentiana pneumonanthe 1987-88

Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Transient Dynamics. (3)

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This workflow produces plots of the short-term dynamics and convergence to stable stage distribution using stage vector projections. ============================================================ This workflow has been created by the Biodiversity Virtual e-Laboratory (BioVeL http://www.biovel.eu/) project. BioVeL is funded by the EU’s Seventh Framework Program, grant no. 283359. This workflow was created based on Package ‘popbio’ in R. Stubben, C & B. Milligan. 2007. Estimating and Anal...

Created: 2012-11-02 | Last updated: 2014-07-31

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Matrix Population Model construction and analysis v20 Workflow Matrix Population Model analysis v12 Blob Stage Matrix of Gentiana pneumonanthe 1987-88

Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Age specific analysis (3)

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The age specific analysis workflow gives the basic information on age-specific survival, this includes the mean, variance and coefficient of variation (cv) of the time spent in each stage class and the mean and variance of the time to death. Fundamental matrix (N): is the mean of the time spent in each stage class. Variance (var): is the variance in the amount of time spent in each stage class. Coefficient of variation (cv): is the coefficient of variation of the time spent in each class...

Created: 2012-11-02 | Last updated: 2014-07-24

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Matrix Population Model construction and analysis v20 Workflow Matrix Population Model analysis v12 Blob Stage Matrix of Gentiana pneumonanthe 1987-88

Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Eigen analysis (3)

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The Eigen analysis results are a set of demographic statistics: 1) Lambda or dominant eigenvalue: The population will be stable, grow or decrease at a rate given by lambda: eg: ? = 1 (population is stable), ? > 1 (population is growing) and finally ? < 1 (populatiopn is decreasing) . 2) The stable stage distribution: It is the proportion of the number of individuals per stage and it is given by (w). Elasticity and Sensitivity: Sensitivity and elasticity analyses are prospective analyses....

Created: 2012-11-02 | Last updated: 2014-07-25

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Matrix Population Model construction and analysis v20 Workflow Matrix Population Model analysis v12 Blob Stage Matrix of Gentiana pneumonanthe 1987-88

Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Demographic data Gentiana pneumonanthe 1987-1991 fr...

Created: 2012-11-02 12:37:19 | Last updated: 2014-07-04 12:31:17

Credits: User Maria Paula Balcazar-Vargas User Gerard Oostermeijer

Attributions: Workflow Creation of a stage matrix model from demographic monitoring of individuals in an animal or plant population Workflow Matrix Population Model construction and analysis v20

License: Creative Commons Attribution-No Derivative Works 3.0 Unported License

This is a .txt file of four years demographic data of the species: Gentiana pneumonanthe, collected and published by Gerard Oostermeijer (Instituut voor Biodiversiteit en Ecosysteem Dynamica (IBED), Universiteit van Amsterdam).This file allow users to run the workflow Creation of a stage matrix model from demographic monitoring of individuals in an animal or plant population (http://www.myexperiment.org/workflows/3276.html) or Matrix Population Model construction and analysis v...

File type: Plain text

Comments: 0 | Viewed: 99 times | Downloaded: 53 times

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