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Taverna 2
Uploader
3377?size=60x60 Gb Jon Giddy

Workflow Test interaction page in myExperiment (9)

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This workflow demonstrates the feasibility of storing interaction pages in myExperiment

Created: 2014-02-04 | Last updated: 2014-02-06

Credits: User Jon Giddy

Uploader
3377?size=60x60 Gb Jon Giddy
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Blob Partition Years Interaction Page

Created: 2014-02-04 10:52:30 | Last updated: 2014-02-06 12:33:46

Credits: User Jon Giddy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Interaction page to allow a range of years to be grouped

File type: htm

Comments: 0 | Viewed: 31 times | Downloaded: 13 times

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Uploader
3377?size=60x60 Gb Jon Giddy
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Blob Partition Years Javascript

Created: 2014-02-04 10:50:20

Credits: User Jon Giddy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Javascript part of an interaction page to partition a range of years into groups. 

File type: JavaScript

Comments: 0 | Viewed: 16 times | Downloaded: 31 times

This File has no tags!

Taverna 1
Uploader
Avatar Alice Heliou

Workflow Entrez Gene to KEGG Pathway (1)

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This workflow takes in Entrez gene ids then adds the string "ncbi-geneid:" to the start of each gene id. These gene ids are then cross-referenced to KEGG gene ids. Each KEGG gene id is then sent to the KEGG pathway database and its relevant pathways returned.

Created: 2014-01-30

Credits: User Alice Heliou

Taverna 1
Uploader
Avatar Alice Heliou

Workflow setp2 (1)

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Traduction test

Created: 2014-01-30 | Last updated: 2014-01-30

Credits: User Alice Heliou

Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Matrix Terschelling 89-90

Created: 2014-01-29 11:46:02 | Last updated: 2014-03-28 14:18:57

Credits: User Gerard Oostermeijer

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a .txt file of a stage matrix of the species: Gentiana pneumonanthe, collected and published by Gerard Oostermeijer (Instituut voor Biodiversiteit en Ecosysteem Dynamica (IBED), Universiteit van Amsterdam).This file allow users to run the workflows:Life Table Response Experiments (LTRE) Fixed design Place effects V1 (http://www.myexperiment.org/packs/574.html) and Life Table Response Experiments (LTRE)_Year Effect One Location V1 (http://www.myexperi...

File type: Plain text

Comments: 0 | Viewed: 72 times | Downloaded: 41 times

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Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Matrix Terschelling 88-89

Created: 2014-01-29 11:44:47 | Last updated: 2014-03-28 14:18:17

Credits: User Gerard Oostermeijer

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a .txt file of a stage matrix of the species: Gentiana pneumonanthe, collected and published by Gerard Oostermeijer (Instituut voor Biodiversiteit en Ecosysteem Dynamica (IBED), Universiteit van Amsterdam).This file allow users to run the workflows:Life Table Response Experiments (LTRE) Fixed design Place effects V1 (http://www.myexperiment.org/packs/574.html) and Life Table Response Experiments (LTRE)_Year Effect One Location V1 (http://www.myexperi...

File type: Plain text

Comments: 0 | Viewed: 64 times | Downloaded: 39 times

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Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Matrix Lochem 89-90

Created: 2014-01-29 11:42:38

Credits: User Gerard Oostermeijer

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a .txt file of a stage matrix of the species: Gentiana pneumonanthe, collected and published by Gerard Oostermeijer (Instituut voor Biodiversiteit en Ecosysteem Dynamica (IBED), Universiteit van Amsterdam).This file allow users to run the workflow Life Table Response Experiments (LTRE) Fixed design Place effects V1 (http://www.myexperiment.org/packs/574.html). If you use the file please quote as:Oostermeijer, J.G.B. M.L. Brugman, E.R. de Boer; H.C.M. Den ...

File type: Plain text

Comments: 0 | Viewed: 67 times | Downloaded: 43 times

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Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Matrix Dwingeloo 1 88-89

Created: 2014-01-29 11:22:20

Credits: User Gerard Oostermeijer

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a .txt file of a stage matrix of the species: Gentiana pneumonanthe, collected and published by Gerard Oostermeijer (Instituut voor Biodiversiteit en Ecosysteem Dynamica (IBED), Universiteit van Amsterdam).This file allow users to run the workflow Life Table Response Experiments (LTRE) Fixed design Place effects 1 (http://www.myexperiment.org/packs/574.html) If you use the file please quote as:Oostermeijer, J.G.B. M.L. Brugman, E.R. de Boer; H.C.M. Den Nijs. 1...

File type: Plain text

Comments: 0 | Viewed: 59 times | Downloaded: 29 times

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Creator
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Pack Life Table Response Experiments Fixed design Place e...


Created: 2014-01-29 10:42:06 | Last updated: 2014-08-14 08:04:25

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Life Table Response Experiments place effect workflow provides an environment to analyse one or more matrices (e.g. matrices of different years from the same place) from two or more places. The objective of this workflow is to determine the effects of the research places or localities (2 or more) on λ. This workflow performs a fixed LTRE, one way design (Caswell 2001). LTRE is a retrospectiv...

13 items in this pack

Comments: 0 | Viewed: 85 times | Downloaded: 36 times

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Taverna 2
Uploader
3463?size=60x60 Gab

Workflow SimpleTest (1)

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This is a simple test workflow. It has only one node that takes an input (a string) and return a string of the form processed(input).

Created: 2014-01-28 | Last updated: 2014-01-28

Credits: User Gab

Taverna 2
Uploader
3166?size=60x60 Gb Robert Haines

Workflow Empty list output (1)

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Simply returns a single port, depth 1, with nothing in it.

Created: 2014-01-24

Credits: User Robert Haines User Alan Williams

Taverna 2
Uploader
3166?size=60x60 Gb Robert Haines

Workflow Empty list output and a value (1)

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Simply returns a port, depth 1, with nothing in it and a port, depth 0, with a constant.

Created: 2014-01-24

Credits: User Robert Haines User Alan Williams

Taverna 2
Uploader
3166?size=60x60 Gb Robert Haines

Workflow PDF Read (1)

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Read a PDF from a URL

Created: 2014-01-24

Credits: User Robert Haines User Alan Williams

Uploader
4059?size=60x60 Gb Aleksandra Pawlik
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Blob Using R service in Taverna - Introduction

Created: 2014-01-22 13:29:52

Credits: User Norman Morrison User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Introduction to using R service in Taverna workflows.

File type: PowerPoint presentation

Comments: 0 | Viewed: 37 times | Downloaded: 32 times

This File has no tags!

Uploader
4059?size=60x60 Gb Aleksandra Pawlik
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Blob Introduction to building workflows with Taverna

Created: 2014-01-22 13:28:47

Credits: User Aleksandra Pawlik User Katy Wolstencroft User Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Introduction to building workflows with Taverna for the Cranfield University course.

File type: PowerPoint presentation

Comments: 0 | Viewed: 33 times | Downloaded: 21 times

This File has no tags!

Uploader
4059?size=60x60 Gb Aleksandra Pawlik
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Blob Cranfield - Introduction to webservices and workflows

Created: 2014-01-22 13:27:41

Credits: User Aleksandra Pawlik User Katy Wolstencroft User Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Introduction to workflows, web services and Taverna for the Cranfield University.

File type: PowerPoint presentation

Comments: 0 | Viewed: 32 times | Downloaded: 25 times

This File has no tags!

Uploader
4144?size=60x60 De Alexey Mints
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Blob MOC finder

Created: 2014-01-22 13:20:46 | Last updated: 2014-10-06 11:00:19

Credits: User Alexey Mints

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Class to search for positions in HEALPix Multi-Order Coverage maps.See http://www.ivoa.net/documents/MOC/20130910/WD-MOC-1.0-20130910.htmlMOCs can be prepared with Aladin or stilts or downloaded fromhttp://alasky.u-strasbg.fr/footprints/tables/vizier/ 

File type: text/x-python

Comments: 0 | Viewed: 86 times | Downloaded: 40 times

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Taverna 2
Uploader
Avatar Lilly Hueber

Workflow P15409 (1)

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worflow to demostrate how to use Taverna with service anel or catalogue

Created: 2014-01-22

Credits: User Lilly Hueber

Taverna 2
Uploader
Avatar Zoe Ward

Workflow Taverna Workflow -1 (1)

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P15409

Created: 2014-01-22

Credits: User Zoe Ward

Taverna 2
Uploader
4168?size=60x60 Gregory Prescott

Workflow Test (1)

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A Simple work flow to gain experiance in using Tavern

Created: 2014-01-22

Credits: User Gregory Prescott User Anthony A User Numan Uddin User Joanne Stonehouse Network-member Cranfield Course - January 2014

Taverna 2
Uploader
Avatar Ruth Eberhardt

Workflow simple fasta workflow (1)

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workflow using services

Created: 2014-01-22

Credits: User Ruth Eberhardt User Aleksandra Pawlik

Taverna 2
Uploader
4059?size=60x60 Gb Aleksandra Pawlik

Workflow Simple FASTA workflow (1)

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A simple Taverna workflo

Created: 2014-01-22

Credits: User Aleksandra Pawlik User Katy Wolstencroft User Alan Williams

Uploader
Avatar Mark Rogers
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Blob simple FASTA workflow

Created: 2014-01-22 11:45:23 | Last updated: 2014-01-22 11:45:41

Credits: User Mark Rogers

License: Creative Commons Attribution-Share Alike 3.0 Unported License

simple FASTA workflow

File type: Trident (Package)

Comments: 0 | Viewed: 12 times | Downloaded: 8 times

This File has no tags!

Uploader
4059?size=60x60 Gb Aleksandra Pawlik
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Blob Test Data for Rservice Tutorial-Biodiversity

Created: 2014-01-19 14:38:17

Credits: User Aleksandra Pawlik User Norman Morrison User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Test data for R service tutorial usage in Taverna.

File type: Excel workbook

Comments: 0 | Viewed: 30 times | Downloaded: 43 times

This File has no tags!

Taverna 2
Uploader
Avatar quevedo79

Workflow Test sharing 2 (1)

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bla,bla

Created: 2014-01-16

Credits: User quevedo79 User Francisco Quevedo

Taverna 1
Uploader
Avatar al basyid basyid

Workflow BiomartAndEMBOSSAnalysis (1)

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Using Biomart and EMBOSS soaplab services, This workflow retrieves a number of sequences from 3 species: mouse, human, rat; align them, and returns a plot of the alignment result. Corresponding sequence ids are also returned.

Created: 2014-01-14

Credits: User al basyid basyid

Taverna 2
Uploader
Avatar Ie Eoincar

Workflow Average solar wind speed at ACE (1)

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This routine returns the average solar wind speed from ACE data given an input time interval.

Created: 2014-01-13

Credits: User Eoincar

Taverna 2
Uploader
Avatar Ie Eoincar

Workflow CME froward propagation (1)

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Ballistic propagation of CME is the SHEBA propagation model. CME speed and speed error produces an estimated time of arrival at desired location.Constructed by David Perez Suarez.

Created: 2014-01-13

Credits: User Eoincar

Taverna 2
Uploader
Avatar Ie Eoincar

Workflow Produce time interval from single time (1)

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Produce a time interval from a single input time.

Created: 2014-01-13

Credits: User Eoincar

Taverna 2
Uploader
Avatar Ie Eoincar

Workflow Produce vo table from helio catalogue (Cat... (1)

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A simple query of the Helio Event Catalogue (http://msslkz.mssl.ucl.ac.uk/helio_hec/HelioTavernaService?wsdl). User can enter catalogue name, time start, time end, and an SQL condition on the query.

Created: 2014-01-13

Credits: User Eoincar

Taverna 2
Uploader
Avatar Ie Eoincar

Workflow Produce vo table from helio catalogue (Cat... (1)

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A simple query of the Helio Event Catalogue (http://msslkz.mssl.ucl.ac.uk/helio_hec/HelioTavernaService?wsdl). User can enter catalogue name, time start, time end, the desired parameter, parameter to order by, and limit on the search result.

Created: 2014-01-13

Credits: User Eoincar

Taverna 2
Uploader
Avatar Ie Eoincar

Workflow Produce vo table from helio catalogue (Cat... (1)

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A simple query of the Helio Event Catalogue (http://msslkz.mssl.ucl.ac.uk/helio_hec/HelioTavernaService?wsdl). User can enter catalogue name, time start, time end and desired paramter(s).

Created: 2014-01-13

Credits: User Eoincar

Taverna 2
Uploader
4080?size=60x60 Renato De Giovanni
Project Biovel

Workflow show_test_results (4)

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Displays test results (ROC curve and confusion matrix) on an interface, allowing users to decide to continue the workflow or not.

Created: 2013-12-24 | Last updated: 2015-05-11

Taverna 2
Uploader
4080?size=60x60 Renato De Giovanni
Project Biovel

Workflow biostif_show_projections (4)

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Displays model projections and points in the BioSTIF web interface (requires previous upload steps).

Created: 2013-12-24 | Last updated: 2015-05-11

Taverna 2
Uploader
4080?size=60x60 Renato De Giovanni
Project Biovel

Workflow configure_external_test (5)

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Displays an interface allowing configuration of external test. Currently can be used to skip external test or run a cross validation procedure. In the later case, it is possible to specify the number of replicates, if AUC should be calculated, if confusion matrix should be calculated (using either a fixed threshold or lpt - lowest precision threshold).

Created: 2013-12-24 | Last updated: 2015-04-04

Taverna 2
Uploader
4080?size=60x60 Renato De Giovanni
Project Biovel

Workflow parse_csv_points (4)

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Parses csv content with species occurrence points in the DarwinCore archive format, determining column indexes and returning the records as a list of points in openModeller format (XML). No distinction is made between presences or absences.

Created: 2013-12-24 | Last updated: 2014-11-18

Taverna 2
Uploader
4080?size=60x60 Renato De Giovanni
Project Biovel

Workflow biostif_upload_points (5)

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Uploads species occurrence points to BioSTIF server.

Created: 2013-12-24 | Last updated: 2014-10-24

Taverna 2
Uploader
4080?size=60x60 Renato De Giovanni
Project Biovel

Workflow select_matching_layers (5)

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Displays an interface where users can select matching layers (same variables) based on the labels of previously selected layers. This is typically needed when projecting a model into a different scenario, where the same variables selected for model creation need to be used on a different chronologic or geographic context. The interaction page may optionally include a label field.

Created: 2013-12-24 | Last updated: 2015-05-11

Taverna 2
Uploader
4080?size=60x60 Renato De Giovanni
Project Biovel

Workflow biostif_upload_raster (4)

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Uploads a raster from a given URL to a BioSTIF server, from where it can be displayed through the BioSTIF web interface.

Created: 2013-12-24 | Last updated: 2015-05-11

Taverna 2
Uploader
4080?size=60x60 Renato De Giovanni
Project Biovel

Workflow project_model (9)

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Projects a model based on the specified parameters.

Created: 2013-12-24 | Last updated: 2014-12-04

Taverna 2
Uploader
Avatar Sixuan Wang

Workflow Workflow of IFC data collection, crowd mod... (3)

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Simulation workflow for crowd modeling in building. It combines all the components needed for crowd simulation (CAD/BIM data collection, crowd modeling, crowd simulation and 3D visualization). This version cannot be executed as is due to local tools dependancies (the components in yellow). The lattest version is available in http://www.myexperiment.org/workflows/4247.html.

Created: 2013-12-18 | Last updated: 2014-06-24

Creator
3375?size=60x60 It Saverio Vicario
Project Biovel
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Pack BayesianPhylogeneticInference


Created: 2013-12-11 13:40:50 | Last updated: 2014-05-19 13:01:14

The family propose different steps to perform a bayesian phylogenetic inference

8 items in this pack

Comments: 0 | Viewed: 51 times | Downloaded: 13 times

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Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario

Workflow JSTWebDav3Input (3)

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Some Broken

Created: 2013-12-11 | Last updated: 2013-12-17

Creator
3375?size=60x60 It Saverio Vicario
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Pack JSTInteraction


Created: 2013-12-11 13:12:49 | Last updated: 2014-06-17 15:20:46

Allow to interact with JST web service and JST Webdav server to access service of biodiversity catalogue https://www.biodiversitycatalogue.org/services/31

5 items in this pack

Comments: 0 | Viewed: 43 times | Downloaded: 13 times

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Taverna 2
Uploader
4080?size=60x60 Renato De Giovanni
Project Biovel

Workflow evaluate_model (9)

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Evaluates a model, returning model values for a given set of points and layers.

Created: 2013-12-10 | Last updated: 2014-12-04

Taverna 2
Uploader
4080?size=60x60 Renato De Giovanni
Project Biovel

Workflow test_model (11)

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Tests a model based on the specified parameters (confusion matrix and/or ROC curve).

Created: 2013-12-10 | Last updated: 2014-12-04

Taverna 2
Uploader
4080?size=60x60 Renato De Giovanni
Project Biovel

Workflow create_model (10)

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Creates a model based on the specified parameters.

Created: 2013-12-10 | Last updated: 2014-12-04

Taverna 2
Uploader
4080?size=60x60 Renato De Giovanni
Project Biovel

Workflow select_or_create_mask (7)

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Displays an interface so that users can select or create a mask.

Created: 2013-12-10 | Last updated: 2015-04-04

Taverna 2
Uploader
1405?size=60x60 At Sven

Workflow ONB Web Archive Fits Characterisation usin... (2)

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Hadoop based workflow for applying FITS on the files contained in ARC web archive container files and ingest the FITS output in a MongoDB using C3PO. Dependencies: - Spacip (https://github.com/shsdev/spacip) - Tomar (https://github.com/openplanets/tomar) - C3PO (https://github.com/peshkira/c3po) Parameters: - hdfs_input_path: Path to a directory which contains textfile(s) with absolute HDFS paths to ARC files - num_files_per_invokation: Number of items to be processed per invokation - fits...

Created: 2013-12-09 | Last updated: 2013-12-10

Credits: User Sven

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Affiliates: myGrid, Taverna, BioCatalogue
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