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Associate SEP events at Earth with flare, ... (1)

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This is the implementation of a use case worked on during CDAW3 of the HELIO project. SEP events propagated backward from Earth to the Sun. We allow for +- 30 min around the predicted time to search for flare events. The timing of the flare event informs the search time for Type III radio event (time_start to time_peak) and for the CME event (time_start to time_start+1h). Results are presented in a mulitlayered VOTable.

Created: 2012-03-13 | Last updated: 2012-03-13

Credits: Anja Le Blanc Rositsa

Attributions: Propagation of the Solar Energetic Particles to the Sun Extract content of columns from VOTables

BayesAss+ estiamtion of populations migrat... (1)

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BayesAss+ is a program that estimates recent migration rates between populations using MCMC. It also estimates each individual’s immigrant ancestry, the generation in which immigration occurred (i.e. the individual can be assigned as an immigrant from a specific population, a non-immigrant, or the offspring of an immigrant and a non-immigrant), the population (as opposed to the sample) allele frequencies, inbreeding (F) values within each population, and genotypes at any locus wit...

Created: 2012-03-08

Credits: Pipeline

Fdist2 Simulation Pipeline Workflow (1)

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Fdist2 is a simulation program to detect loci that might be under selection in samples from structured populations.   Workflow Usage & Specifications The workflow reads an input file "fdist_params2.dat", which consists of 6 lines. This file must only contain numbers in the format described: Total number of demes (100 max). No of populations sampled (must be less than or equal to total number of demes). Expected Fst for infinite allele, infinite island model. Sample si...

Created: 2012-03-08 | Last updated: 2012-03-08

Credits: Pipeline

Migrate Pipeline Workflow (1)

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Migrate estimates effective population sizes and past migration rates between n population assuming a migration matrix model with asymmetric migration rates and different subpopulation sizes. Migrate uses maximum likelihood or Bayesian inference to jointly estimate all parameters.     Workflow Usage & Specifications Migrate can use the following data types: •Sequence data using Felsenstein's 84 model with or without site rate variation, •Single nucleotide poly...

Created: 2012-03-08

Credits: Pipeline

Get Pathway-Genes by Entrez gene id (4)

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Given a specific entrez gene id, returns the pathways that this gene participates in and for each of those pathways which genes are associated with. The workflow outputs also a KEGG pathway map and the objects are colored according to the input color values.

Created: 2012-03-08 | Last updated: 2012-04-14

Credits: Eleni

VAMDC Query to Two Nodes using HTML Consum... (2)

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Workflow to two TAP-XSAMS Node and see results in a HTML view using a Consumer Service. This workflow queries the BaseCol and CDMS Node for MoleculeStoichiometricForumua of 'CO' VAMDC Taverna Plugin: http://voparis-twiki.obspm.fr/twiki/bin/view/VAMDC/TavernaUserGuide **NOTE an update to the plugin will need to be released later to handle prefixes on certain query nodes and their restrictables. For instance BaseCol expects 'Target.MoleculeStoichiometricFormula' instead of just 'MoleculeSto...

Created: 2012-03-07 | Last updated: 2012-09-12

Credits: Stormshadow Virtual Atomic and Molecular Data Centre - VAMDC

VAMDC SpectCol tool using Full VAMDC-Tap Q... (2)

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Runs the SpectCol tool bundled with the plugin and can handle a list of URLS. This version asks for the full vamdc URL. SpectCol information: SPECTCOL is a tool that implements VAMDC standards, r etrieve relevant information from different databases such as CDMS, HITRAN, BASECOL, and can upload local files. All transfer of data between the client and the databases use the VAMDC-XSAMS schema. The spectroscopic and collisional information is combined and useful outputs (ascii or xsams) are ...

Created: 2012-03-07 | Last updated: 2012-09-12

Credits: Stormshadow

VAMDC Query to Two Nodes using HTML Consum... (2)

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Workflow to two TAP-XSAMS Node and see results in a HTML view using a Consumer Service. This workflow queries the Hitran and CDMS Node for MoleculeStoichiometricForumua of 'CO' VAMDC Taverna Plugin: http://voparis-twiki.obspm.fr/twiki/bin/view/VAMDC/TavernaUserGuide

Created: 2012-03-07 | Last updated: 2012-09-12

Credits: Stormshadow Virtual Atomic and Molecular Data Centre - VAMDC

VAMDC to query on ChemicalName 'OR' Stoich... (4)

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Workflow to query just one TAP-XSAMS Node. This workflow queries the Hitran Node for MoleculeChemicalName of 'HF' and StoichimetricFormula of 'HV' Demonstrates building a query for two Restrictables. VAMDC Taverna Plugin: http://voparis-twiki.obspm.fr/twiki/bin/view/VAMDC/TavernaUserGuide

Created: 2012-03-07 | Last updated: 2012-09-12

Credits: Stormshadow Virtual Atomic and Molecular Data Centre - VAMDC

Workflow to Query TAP-XSAMS node. (3)

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Workflow to just one TAP-XSAMS Node. This workflow queries the Hitran Node for MoleculeChemicalName of 'HF' VAMDC Taverna Plugin: http://voparis-twiki.obspm.fr/twiki/bin/view/VAMDC/TavernaUserGuide

Created: 2012-03-07 | Last updated: 2012-09-12

Credits: Stormshadow

VAMDC VALD query with SME processing (4)

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VAMDC workflow that queries the VALD Atomic database in Moscow and runs SME (Spectroscopy Made Easy) VAMDC Taverna Plugin: http://voparis-twiki.obspm.fr/twiki/bin/view/VAMDC/TavernaUserGuide

Created: 2012-03-07 | Last updated: 2012-11-29

Credits: Stormshadow Virtual Atomic and Molecular Data Centre - VAMDC

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Data supplementary to meta-mining workflows

Created: 2012-03-05 22:22:33 | Last updated: 2012-03-05 22:23:51

Credits: Lawrynka

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: ZIP archive

Comments: 0 | Viewed: 74 times | Downloaded: 39 times

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RISE UI: Select ZIP file (1)

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 This workflow ask the user to select a ZIP file on his own computer.

Created: 2012-03-05 | Last updated: 2012-03-05

Credits: Jribault

RISE UI: Select XML file (1)

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 This workflow ask the user to select an existing XML file on his own computer.

Created: 2012-03-05 | Last updated: 2012-03-05

Credits: Jribault

RISE UI: Create a Framework XML File (1)

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This workflow create a framework configuration XML file based on user interaction.

Created: 2012-03-05 | Last updated: 2012-03-05

Credits: Jribault

RISE UI: Choose User Workspace (1)

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This workflow ask the user to select a user workspace among those present on the RISE server.

Created: 2012-03-05 | Last updated: 2012-03-05

Credits: Jribault

RISE UI: Choose Service Type (1)

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This workflow ask the user to select a service type among those present on the RISE server.

Created: 2012-03-05 | Last updated: 2012-03-05

Credits: Jribault

RISE UI: Choose Framework (1)

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This workflow ask the user to choose a framework among those present on the RISE server.

Created: 2012-03-05 | Last updated: 2012-03-05

Credits: Jribault

RISE UI: Ask Framework Name (2)

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  This workflow ask the user to enter a new framework name.

Created: 2012-03-05 | Last updated: 2012-03-22

Credits: Jribault

RISE Atomic Service: Upload ZIP Model File (1)

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 This workflow upload a ZIP file of the simulation model on the RISE server.

Created: 2012-03-05 | Last updated: 2012-03-05

Credits: Jribault

RISE Atomic Service: Get Simulation Result (1)

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 This workflow get the simulation result of an existing simulation on the RISE server.

Created: 2012-03-05 | Last updated: 2012-03-05

Credits: Jribault

RISE Atomic Service: Execute Simulation (1)

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 This workflow execute a simulation on the RISE server, and wait for its completion.

Created: 2012-03-05 | Last updated: 2012-03-05

Credits: Jribault

RISE Atomic Service: Delete Framework (1)

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 This workflow delete an existing framework on the RISE Server.

Created: 2012-03-05 | Last updated: 2012-03-05

Credits: Jribault

RISE Atomic Service: Create Framework (1)

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 This workflow create a new framework on the RISE Server

Created: 2012-03-05 | Last updated: 2012-03-05

Credits: Jribault

Meta-mining workflow that performs crossva... (1)

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Performs a crossvalidation on a data set composed of baseline RapidMiner workflows described with dataset characteristics used by the given workflow and the learning algorithm used in the given workflow.

Created: 2012-03-05 | Last updated: 2012-03-05

RISE Atomic Service: Create Account (1)

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 This workflow create an new user account on the RISE server

Created: 2012-03-05 | Last updated: 2012-03-05

Credits: Jribault

Semantic meta-mining workflow that perform... (1)

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Performs a crossvalidation on a data set composed of meta-data of baseline RapidMiner workflows expressed in RDF with the DMOP's ontology terminology for representing processes. Includes discovery of a set of semantic features (patterns) by the Fr-ONT-Qu algorithm (‘workflow patterns’). Through propositionalisation approach those features may be used in an arbitrary (propositional) RapidMiner classification operator.

Created: 2012-03-05 | Last updated: 2012-03-05

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HELIO Ontology

Created: 2012-03-05 11:25:21

Credits: Anja Le Blanc

License: Creative Commons Attribution 3.0 Unported License

File type: ZIP archive

Comments: 0 | Viewed: 63 times | Downloaded: 39 times

Filter CME events to events which could ha... (1)

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This workflow uses the initial time period to search for time periods where Earth and Mars are not further appart than 80 degrees. These time periods are used to find Halo CME events. The CME events are forward propagated to Earth and Sun. Only events were the propagation model predicts that both planets are on the propagation path will be included in the final VOTable

Created: 2012-02-29 | Last updated: 2012-02-29

Credits: Anja Le Blanc

Disability estimates by year (1)

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Uses census and health survey for england together with R to estimate disability for districts in the UK

Created: 2012-02-28

Credits: Ian Dunlop

Planning Overview (Scp, Migration, Charact... (1)

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Copies an image from a remote path using scp. Then starts a migration action on the image and extracts properties from the original and migrated image. The properties are compared and on the image data itself, QA algorithms are started.

Created: 2012-02-28

Credits: Markus Plangg

Image Characterisation - Fits (Simple) (1)

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Extracts metadata from images.

Created: 2012-02-27 | Last updated: 2012-02-27

Credits: Markus Plangg

Image QA (RAW/NonRAW, Ssim, Equals) (1)

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Reads images either by reading the file directly or using dcraw depending on the image mimetype. Then runs QA algorithms to compare the images.

Created: 2012-02-27 | Last updated: 2012-02-27

Credits: Markus Plangg

Image QA - Read image (RAW/NonRAW) (1)

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Reads an image for evaluation. How the file is read depends on the image type (RAW, NonRAW) of the current image and the image to compare with.

Created: 2012-02-27 | Last updated: 2012-02-27

Credits: Markus Plangg

Propagation of CME from the Sun (1)

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Uses the processing service to calculate the objects (planets and observatories) which a CME might hit. Required longitude input is the longitude of the associated flare event.

Created: 2012-02-27 | Last updated: 2012-02-27

Credits: Anja Le Blanc

VAMDC VALD query with SME processing (2)

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VAMDC workflow that queries the VALD Atomic database in Moscow and runs SME (Spectroscopy Made Easy) VAMDC Taverna Plugin: http://voparis-twiki.obspm.fr/twiki/bin/view/VAMDC/TavernaUserGuide

Created: 2012-02-24 | Last updated: 2012-09-12

CME backwards propagation (1)

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Workflow propagates an CME event from its observing point (planet/spacecraft) back to the sun. The propagation also provides the timing of this event at other points in space (planet/spacecraft)

Created: 2012-02-23 | Last updated: 2012-02-23

Credits: Anja Le Blanc

Propagation of the Solar Energetic Particl... (1)

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use of the processing service to calculate time delays to the planets Inputs: time when propagation should start from the hit object hit_object where was the SEP event observed speed of the solar wind error value of solar wind speed beta traveling speed of energetic particals as percentage of the speed of light

Created: 2012-02-22 | Last updated: 2012-02-22

Credits: Anja Le Blanc

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DALEC

Created: 2012-02-22 00:55:52

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Trident (Package)

Comments: 0 | Viewed: 22 times | Downloaded: 18 times

Find protein identifications in PRIDE (2)

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Find protein identifications information in the PRIDE database using a protein accession as input.

Created: 2012-02-21 | Last updated: 2012-02-22

Credits: Rafael C. Jimenez

RAWverna Image Evaluator - Evaluate relative (1)

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Takes two images as byte array and compares them using the RAWverna Image Evaluator.

Created: 2012-02-21 | Last updated: 2012-02-21

Credits: Markus Plangg

RAWverna Image Evaluator - Evaluate Equals (1)

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Takes two images as byte array and compares them for equality using the RAWverna Image Evaluator.

Created: 2012-02-21 | Last updated: 2012-02-21

Credits: Markus Plangg

RAWverna image evaluation - Read images (RAW) (1)

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Reads RAW images for evaluation by RAWverna.

Created: 2012-02-21

Credits: Markus Plangg

RAWverna Image evaluation - Read Image (RAW) (1)

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Reads an image from the given path using dcraw for image comparison.

Created: 2012-02-21 | Last updated: 2012-02-21

Credits: Markus Plangg

RAWverna Image evaluation - Read images (R... (1)

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Reads images for evaluation by RAWverna. The read parameters depend on the type of the images.

Created: 2012-02-21 | Last updated: 2012-02-21

Credits: Markus Plangg

Get image mimetype (1)

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Returns the mimetype of an image.

Created: 2012-02-21 | Last updated: 2012-02-21

Credits: Markus Plangg

Convert by target path (1)

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Converts a file to a target format depending on the target path extension.

Created: 2012-02-21 | Last updated: 2012-08-14

Credits: Markus Plangg

Get a list of Protein Identification exper... (3)

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Get a list of Protein Identification experiments from PRIDE by a Gene Ontology query

Created: 2012-02-21 | Last updated: 2013-07-10

Credits: Rafael C. Jimenez

Parse QuickGO "proteinList" file format (2)

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Parse QuickGO "proteinList" file format. http://www.ebi.ac.uk/QuickGO/reference.html

Created: 2012-02-20 | Last updated: 2013-07-10

Credits: Rafael C. Jimenez

WCP-04 Exclusive choice - if/else branching (1)

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The choice of executing choiceA or choiceB is determined by using String_List_Intersection and String_List_Difference. If in="true" then the intersection will yield a non-empty list, triggering execution of choiceA. This list will however not differ from the input, and so choiceB will iterate over an empty list (ie. not execute). Note how using 'difference' for the else-case here means that if you run the workflow with in="bob", choiceB would still run. Some early if/el...

Created: 2012-02-20 | Last updated: 2012-02-20

Credits: Stian Soiland-Reyes

Attributions: Example of a conditional execution workflow Example of conditional invocation