All content

Search filter terms
Filter by category
Filter by type
Filter by tag
Filter by user
Filter by licence
Filter by group
Filter by wsdl
Filter by curation
Results per page:
Sort by:
Showing 4527 results. Use the filters on the left and the search box below to refine the results.
Uploader

Blob wikipedia articles

Created: 2012-01-17 11:14:36

Credits: User AGeduldig

License: Creative Commons Attribution-Share Alike 3.0 Unported License

wikipedia articles of different topics (car, sport, geography)

File type: application/x-zip-compressed

Comments: 0 | Viewed: 33 times | Downloaded: 69 times

This File has no tags!

Workflow FFmpeg convert audio2aac (SOAP) (1)

Thumb
Converts supported audio files to AAC using FFmpeg through a SOAP webservice.

Created: 2012-01-16 | Last updated: 2012-01-16

Credits: User Rui Castro

Workflow ImageMagick convert image2jp2 (SOAP) (1)

Thumb
Converts supported image files to JPEG2000 using ImageMagick through a SOAP webservice.

Created: 2012-01-16 | Last updated: 2012-01-16

Credits: User Rui Castro

Workflow ImageMagick convert image2jp2 (REST) (1)

Thumb
Converts supported image files to JPEG2000 using ImageMagick through a REST webservice.

Created: 2012-01-16 | Last updated: 2012-01-16

Credits: User Rui Castro

Workflow FFmpeg convert audio2aac (REST) (1)

Thumb
Converts supported audio files to AAC using FFmpeg through a REST webservice.

Created: 2012-01-16 | Last updated: 2012-01-16

Credits: User Rui Castro

Blob Advanced exercises for Next Gen Taverna tutorial

Created: 2012-01-16 16:56:02 | Last updated: 2012-01-17 16:00:23

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

These exercises highlight some of the more advanced features of the Taverna engine, for example, looping, iteration and retries

File type: PowerPoint presentation

Comments: 0 | Viewed: 43 times | Downloaded: 51 times

This File has no tags!

Workflow Reactome pathways (1)

Thumb
This workflow returns a list of pathways gene products are involved in, along with their descriptions and Gene Ontology annotations

Created: 2012-01-16

Credits: User Katy Wolstencroft

Uploader

Blob Pattern detection components

Created: 2012-01-16 14:32:01

Credits: User jhermes

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Some of the components of the Pattern Detector experiment that are still work in progress and therefore not a part of the Tesla distribution. Before executing the experiment, you should unzip this file and copy the resulting jar and zip files into the Tesla/libs folder (see http://tesla.spinfo.uni-koeln.de/nightlies/experiment_import.html for details).

File type: ZIP archive

Comments: 0 | Viewed: 36 times | Downloaded: 25 times

Tags:

Creator

Pack Structural methods on ciphers


Created: 2012-01-16 10:59:40 | Last updated: 2012-01-16 11:01:03

This is a pack of experiments (from my dissertation), where linguistic entities were determined within two ciphers (the Trithemian Polygraphia III and the Voynich Manuscript) using structural methods (minimal pair analysis, distributional measurements). Required text files supplied.

5 items in this pack

Comments: 0 | Viewed: 40 times | Downloaded: 26 times

Tags:

Uploader

Workflow VM distributional morpheme analysis (1)

Thumb
Distributional analysis of the Morphemes from the Voynich Manuskript.

Created: 2012-01-16

Credits: User jhermes

Uploader

Workflow PIII distributional morpheme analysis (1)

Thumb
Distributional analysis of the Morphemes from the Polygraphia III codebook.

Created: 2012-01-16 | Last updated: 2012-01-16

Credits: User jhermes

Uploader

Workflow VM grapheme clustering (1)

Thumb
Clustering of Graphemes from the Voynich Manuskript,determined by minimal pair analysis.

Created: 2012-01-16

Credits: User jhermes

Uploader

Workflow PIII grapheme clustering (1)

Thumb
Clustering of Graphemes from Polygraphia III, determined by minimal pair analysis.

Created: 2012-01-16 | Last updated: 2012-01-16

Credits: User jhermes

Uploader

Blob Dissertation Text Files II

Created: 2012-01-16 10:17:34

Credits: User jhermes

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Another text files I've used within the experiments of my dissertation (PIII codebook, PIII text and - again - the VIAF). To reproduce my structual analyses within our workflow system Tesla, it is required to upload the text files with the Tesla Corpus Manager (Tutorial).

File type: ZIP archive

Comments: 0 | Viewed: 42 times | Downloaded: 28 times

Tags:

Workflow Import and convert gene list (1)

Thumb
This workflow extracts a column of RefSeq gene IDs from a CSV file and then converts them to Unigene identifiers

Created: 2012-01-15 | Last updated: 2012-03-12

Credits: User Katy Wolstencroft

Workflow getFirstElementDFS (2)

Thumb
Returns the first element of a nested list using depth first search. The maximum depth of the input is set to 2. You can savely increase this by increasing the depth of the workflow input port and the beanshell input port. Taverna will wrap the input into a list with correct depth. However this will create a little overhead.

Created: 2012-01-13 | Last updated: 2012-02-13

Uploader

Blob comparison of plant مقارنة

Created: 2012-01-12 20:21:14 | Last updated: 2012-01-12 20:21:15

Credits: User Ahmed hosny

Attributions: Blob Picture 3

License: Creative Commons Attribution-Share Alike 3.0 Unported License

plant DNA Virus

File type: JPEG image

Comments: 0 | Viewed: 29 times | Downloaded: 20 times

Tags:

Uploader

Workflow workflow in systems (1)

biology

Created: 2012-01-12

Credits: User Ahmed hosny

Blob Galaxy Chip-Seq Gene List

Created: 2012-01-12 12:50:30 | Last updated: 2012-01-12 12:50:31

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file contains a list of genes associated with Chip-Seq peaks. It is part of a Galaxy-Taverna Next Gen Sequencing tutorial

File type: Excel workbook

Comments: 0 | Viewed: 46 times | Downloaded: 193 times

This File has no tags!

Creator

Pack Comparative text statistics


Created: 2012-01-11 13:46:17 | Last updated: 2012-01-11 16:00:03

Three tesla experiments on text of different types, showing similarities between a PIII cipher and the VM code. Required texts supplied.

4 items in this pack

Comments: 0 | Viewed: 64 times | Downloaded: 31 times

Tags:

Uploader

Workflow VM text parameters (1)

Thumb
Calculation of some basic parameters of the text from the Voynich Manuskript (VMS). Parameters: type count, token count, type token ratio, wordlength, entropy, conditional entropy, coincidence values, random walk values, repeated words and minimal pairs. The VMS text (EVA Interlinear Archive File) is referenced in http://www.myexperiment.org/files/660.html)

Created: 2012-01-11

Credits: User jhermes

Uploader

Workflow Polygraphia III encription text parameters (1)

Thumb
Calculation of some basic parameters of a text, enciphered with the method that the german ape Johannes Trithemius described in his book Polygraphia III Parameters: type count, token count, type token ratio, wordlength, entropy, conditional entropy, coincidence values, random walk values, repeated words and minimal pairs. Enciphed text (from project Guttenberg, referenced in http://www.myexperiment.org/files/660.html): Melanchton: Confessions (ger)

Created: 2012-01-11 | Last updated: 2012-01-11

Credits: User jhermes

Uploader

Workflow Renaissance texts parameters (1)

Thumb
Calculation of some basic parameters of renaissance texts written in different languages. Parameters: type count, token count, type token ratio, wordlength, entropy, conditional entropy, coincidence values, random walk values, repeated words and minimal pairs. Texts (from project Guttenberg, referenced in http://www.myexperiment.org/files/660.html): Dee (en), dante (it), descartes (lat), ceasar (anc lat), paracelsus (ger), melanchton (ger)

Created: 2012-01-11 | Last updated: 2012-01-11

Credits: User jhermes

Uploader

Blob Dissertation Text Files I

Created: 2012-01-11 09:32:36 | Last updated: 2012-01-16 10:05:34

Credits: User jhermes

License: Creative Commons Attribution-No Derivative Works 3.0 Unported License

These are the text files I've used within the experiments of my dissertation. To reproduce my experiments within our workflow system Tesla, it is required to upload the text files with the Tesla Corpus Manager (Tutorial).

File type: ZIP archive

Comments: 0 | Viewed: 329 times | Downloaded: 136 times

Tags:

Workflow Calculation of distances, magnitutes and l... (2)

Thumb
Calculation of distances, corrected apparent B magnitude mB-corr and luminosities with values gathered from the HyperLEDA database. This workflow receives a list of galaxy names (hyperLEDA names. ie: KIG0001) and a file with the morphological types of those galaxies Using the name of a galaxy, the workflow querys Hyperleda to extract some properties of this galaxy (J2000 Coordinates, velocity, galactic extinction,log of axis ratio, and the Total B-magnitude ). With this properties it calcula...

Created: 2012-01-10 | Last updated: 2012-01-16

Credits: User Stian Soiland-Reyes

Attributions: Workflow Calculation of distances, magnitutes and luminosities using HyperLEDA Blob Data involved in RO Propagation of quantities Blob Scripts in RO Propagation of quantites

Uploader

Blob Dataset for item recommendation

Created: 2012-01-09 09:46:37

Credits: User Ninoaf

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 This dataset is used in: Pack: Recommender systems workflow templates 2012 http://www.myexperiment.org/packs/238.html. This is a sample dataset of the Yahoo! Music community's preferences to various musical items,  which was released for the KDD-Cup 2011.   Dror,G., Koenigstein,N., Koren,Y., Weimer,M.,The Yahoo! Music Dataset and KDD-Cup'11. KDD-Cup Workshop, 2011.   Copy and paste files to your RapidMiner repository in the same folder with other workflow from thi...

File type: Trident (Package)

Comments: 0 | Viewed: 136 times | Downloaded: 106 times

This File has no tags!

Uploader

Workflow Item recommendation collaborative-based wo... (1)

Thumb
This workflow takes input 2 as a train set for item-k-NN recommender system. The model peformance is evaluated on test set (input 1). This workflow uses recommender system extension. Train and test set must contain user_id and item_id atrributes which need to have special roles user identification and item identification.

Created: 2012-01-09 | Last updated: 2012-01-09

Workflow Map a Entrez Gene ID to a Gene Ontology ID (1)

 BSL Groovy script that uses BridgeDB to convert a Entrez Gene identifier into a Gene ontology identifier.

Created: 2012-01-07

Credits: User Egon Willighagen

Workflow Hello Anyone (1)

Thumb
An extension to helloworld.t2flow - this workflow takes a workflow input "name" which is combined with the string constant "Hello, " using the local worker "Concatenate two strings", and outputs the produced string to the workflow output "greeting".

Created: 2012-01-03 | Last updated: 2014-03-03

Credits: User Stian Soiland-Reyes

Attributions: Workflow Hello World

Workflow Hello World (1)

Thumb
One of the simplest workflows possible. No workflow input ports, a single workflow output port "greeting", outputting "Hello, world!" as produced by the String Constant "hello".

Created: 2012-01-03 | Last updated: 2014-03-03

Credits: User Stian Soiland-Reyes

Workflow [untitled] (1)

Thumb
 A KUP domain image segmentation workflow that identifies ans annotates important regions on microscopic Kidney biopsy images (vessels and glomerulus)

Created: 2012-01-03 | Last updated: 2012-01-03

Credits: User Charalampos

Workflow Discretize by Binning (1)

Thumb
 Choosing an attribute ('a1') with an attribute filter type condition (single).

Created: 2011-12-20 | Last updated: 2011-12-20

Credits: User Rishi Ramgolam

Workflow Mock-Up mp3 To Wav Migrate And QA (4)

Thumb
This is a Mock-Up Workflow illustrating SCAPE solution 'SO4 mp3 To Wav Migrate And QA Mock Up', see wiki.opf-labs.org/display/SP/SO4+Audio+mp3+to+wav+Migration+and+QA+Workflow  

Created: 2011-12-15 | Last updated: 2014-05-14

Credits: User Bolette Jurik

Workflow Propagation of the Solar Energetic Particl... (2)

Thumb
use of the processing service to calculate time delays to the planets Inputs: time when propagation should start longitude of starting point on the sun speed of the solar wind error value of solar wind speed traveling speed of energetic particals as percentage of the speed of light

Created: 2011-12-13 | Last updated: 2012-02-03

Credits: User Anja Le Blanc Network-member HELIO

Workflow Propagation of the Co-roationg interaction... (2)

Thumb
use of the processing service to calculate time delays to the planets Inputs: time when propagation should start longitude of starting point on the sun speed of the solar wind error speed of the solar wind

Created: 2011-12-13 | Last updated: 2012-02-03

Credits: User Anja Le Blanc

Uploader

Blob SKOS Vocabulary Survey Data

Created: 2011-12-12 19:12:29 | Last updated: 2011-12-12 19:12:30

Credits: User Azlinayati

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 This file contains the survey data for the SKOS Vocabularies on the Web survey.

File type: Excel workbook

Comments: 0 | Viewed: 50 times | Downloaded: 33 times

This File has no tags!

Creator

Pack The current state of SKOS vocabularies on the Web


Created: 2011-12-12 14:55:33 | Last updated: 2011-12-12 19:12:51

 This pack contains files related to data and analysis of a survey on "The current state of SKOS vocabularies on the Web". A report was compiled discussing and submitted to the 9th Extended Semantic Web Conference (ESWC 2012).

1 item in this pack

Comments: 0 | Viewed: 29 times | Downloaded: 14 times

This Pack has no tags!

Uploader

Blob HELIO: Discovery and Analysis of Data in Heliophysics

Created: 2011-12-12 14:19:40 | Last updated: 2011-12-12 14:21:29

Credits: User Donal Fellows

License: Creative Commons Attribution-Noncommercial-Share Alike 3.0 Unported License

 This is the camera-ready copy of the HELIO eScience paper for IEEE eScience 2011.

File type: Adobe PDF

Comments: 0 | Viewed: 44 times | Downloaded: 222 times

Tags:

Uploader

Blob HELIO Presentation at IEEE eScience 2011

Created: 2011-12-12 14:16:54

Credits: User Donal Fellows

License: Creative Commons Attribution-Noncommercial-Share Alike 3.0 Unported License

 This is the presentation that I gave at the 7th IEEE International eScience Conference, Stockholm, December 2011. It is on the HELIO project, and particularly on the scientific challenges of heliophysics that are of interest to people working in the eScience domain.

File type: PowerPoint 2007 presentation

Comments: 0 | Viewed: 62 times | Downloaded: 34 times

Tags:

Workflow Connect flare events with proton events on... (2)

Thumb
This workflow uses flares listed in any HELIO HEC flare catalogue (using the semantic mapping service), checks whether these flares are connected to Earth via the Parker spiral, and looks for proton events at earth listed in the goes_proton_event list. The flare listing and the proton listing are combinded into a list of VOTable outputs (one VOTable per flare catalogue with results).

Created: 2011-12-09 | Last updated: 2011-12-13

Credits: User Anja Le Blanc

Attributions: Workflow Connect flare events with proton events on Earth via propagation model

Workflow dcraw (sRGB, ColorInterpolated, FixedWhite... (2)

Thumb
Reads a RAW image with these parameters using dcraw and returns the image data as byte array.

Created: 2011-12-08 | Last updated: 2011-12-16

Workflow dcraw (sRGB, ColorInterpolated, FixedWhite... (2)

Thumb
Reads a RAW image with these parameters using dcraw and returns the image data as byte array.

Created: 2011-12-08 | Last updated: 2011-12-16

Workflow dcraw (NoConversion, NoInterpretation, Fix... (4)

Thumb
Reads a RAW image with these parameters using dcraw and returns the image data as byte array.

Created: 2011-12-08 | Last updated: 2011-12-16

Creator

Pack Presentation - Towards Computational Research Objects


Created: 2011-12-06 09:47:58 | Last updated: 2011-12-07 08:00:18

Title: Towards Computational Research Objects Speaker: David De Roure Event: Microsoft 2011 eScience Workshop Event URI: http://research.microsoft.com/en-us/events/escience2011/ Location: Stockholm, Sweden Date: 6 December 2011 Formats: .pptx 

3 items in this pack

Comments: 0 | Viewed: 38 times | Downloaded: 7 times

This Pack has no tags!

Blob BioVel Taverna Tutorial

Created: 2011-12-05 11:07:46 | Last updated: 2011-12-05 11:07:49

Credits: User Katy Wolstencroft User Alan Williams User Robert Haines User Biomobst

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This tutorial gives an introduction to Taverna, myExperiment and BioCatalogue, using a case study from ecological niche modelling.

File type: PowerPoint presentation

Comments: 0 | Viewed: 70 times | Downloaded: 166 times

Tags:

Creator

Pack wf4ever Deliverable 6.3 Pack


Created: 2011-12-02 09:31:26 | Last updated: 2011-12-02 10:21:03

This pack contains (references to) the workflows for GWAS analysis by workflows that perform pathway and GO analysis and biosemantics data interpretation (a special form of text mining). This pack aggregates the deliverable materials for month 8 for Work Package 6. The workflows have not been published in the scientific domain yet, so its content cannot yet be made public. They are available upon request, in particular for reviewers. Please contact Kristina Hettne or Marco Roos (see credit...

6 items in this pack

Comments: 0 | Viewed: 98 times | Downloaded: 0 times

Tags:

Workflow Match concept profiles (6)

Thumb
Purpose of workflow: The workflow can be used to match a set of concept profiles with another set of concept profiles. Result: A list of concepts ordered by their match to the query concept profiles.

Created: 2011-12-02 | Last updated: 2014-07-14

Credits: User Marco Roos User Kristina Hettne User Martijn Schuemie User Reinout van Schouwen

Blob D5.3v1: Propagation of interdependent quantities in ...

Created: 2011-12-01 22:12:58 | Last updated: 2011-12-01 22:13:01

Credits: User Jose Enrique Ruiz

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This document describes the development of the first Golden Exemplar proposed in Work Package 5: Workflow Astronomy Preservation in the context of the Wf4Ever Project. It pertains to the deployment of a Research Object (RO) associated to the study of the propagation of astrophysical quantities in the calculation of luminosities of galaxies. 

File type: Adobe PDF

Comments: 0 | Viewed: 78 times | Downloaded: 65 times

Tags:

Blob Scripts in RO Propagation of quantites

Created: 2011-12-01 13:21:37 | Last updated: 2011-12-01 13:23:17

Credits: User Jose Enrique Ruiz

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Python scripts used as local services in the workflows contained in RO Propagation of quantites.

File type: application/x-zip-compressed

Comments: 0 | Viewed: 76 times | Downloaded: 49 times

Tags:

Uploader

Workflow Comparison and update values (1)

Thumb
This workflow receives two files, the name of a table and the name of a field as input. One of the file should be contain a list of old values (name galaxy and value), and the other one should be a list of new values (name galaxy,value) The workflow makes a comparison between the two files. This comparison will be a list of 7 columns: name of the galaxy, old value, old error, new value, new error, difference of value, difference of error. In other hand, this workflow makes a sql script with ...

Created: 2011-11-30 | Last updated: 2011-11-30

Results per page:
Sort by: