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EDBT Provenance paper presentation - March, 2010

Created: 2010-03-26 14:05:34 | Last updated: 2010-03-26 14:05:52

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Compare two genomes for similarity (4)

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This workflow takes the file path to two genome nucleotide files in fasta format and requests a minimum similarity required from the user.  The genomes are aligned according to the M-GCAT algorithm (http://alggen.lsi.upc.es/recerca/align/mgcat/intro-mgcat.html) and the genome similarity parsed out of the resultant log file.  Output is either 0 (genome similarity less than required similarity) or 1 (genome similarity equal to or greater than the required similarity). NB - The file p...

Created: 2010-03-17 | Last updated: 2010-03-17

Credits: Gregg Iceton

Calculate molecular mass for entries in a ... (1)

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Created: 2010-03-08

Credits:

Transciption (DNA into RNA) (1)

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This workflow allows a user to transcibe DNA into RNA.

Created: 2010-03-05 | Last updated: 2010-03-05

CaliBayes_Client (1)

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A workflow for consuming CaliBayes web services. CaliBayes: www.calibayes.ncl.ac.uk

Created: 2010-02-03 | Last updated: 2010-02-03

SBML shorthand to SBML converter (1)

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converts SBML shorthand to SBML document via BASIS web services BASIS: www.basis.ncl.ac.uk:81/Basis SBML shorthand: http://www.staff.ncl.ac.uk/d.j.wilkinson/software/sbml-sh/

Created: 2010-02-03 | Last updated: 2010-02-03

SBML to SBML shortand converter (1)

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converts SBML document to SBML shorthand via BASIS web services BASIS: www.basis.ncl.ac.uk:81/Basis SBML shorthand: http://www.staff.ncl.ac.uk/d.j.wilkinson/software/sbml-sh/

Created: 2010-02-03 | Last updated: 2010-02-03

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biobanking conference

Created: 2010-01-05 14:23:37

Credits: Izja

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Chemistry Plan

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Convert a SMILES string into a connection ... (1)

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Created: 2009-12-16

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EBI_InterProScan_T2 (1)

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Perform an InterProScan analysis of a protein sequence using the EBI’s WSInterProScan service (see http://www.ebi.ac.uk/Tools/webservices/services/interproscan). The input sequence to use and the user e-mail address are inputs, the other parameters for the analysis (see Job_params) are allowed to default. InterProScan searches a protein sequence against the protein family and domain signature databases integrated into InterPro (see http://www.ebi.ac.uk/interpro/). A set of matches to the s...

Created: 2009-12-15

Credits: Alan Williams

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PlnTFDB (26/09/09)

Created: 2009-12-15 18:26:11

Credits: Catherine Canevet

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: application/x-gzip-compressed

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KEGG Yeast (15/01/09)

Created: 2009-12-15 18:22:42

Credits: Catherine Canevet

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: application/x-gzip-compressed

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KEGG Arabidopsis, Rice, Sorghum, Wheat (15/09/09)

Created: 2009-12-15 18:21:43

Credits: Catherine Canevet

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: application/x-gzip-compressed

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KEGG Arabidopsis (11/09/09)

Created: 2009-12-15 18:20:37

Credits: Catherine Canevet

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: application/x-gzip-compressed

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AtRegNet (26/09/09)

Created: 2009-12-15 18:18:49

Credits: Catherine Canevet

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: application/x-gzip-compressed

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AraCyc (13/09/09)

Created: 2009-12-15 18:07:03 | Last updated: 2009-12-15 18:19:38

Credits: Catherine Canevet

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: application/x-gzip-compressed

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demo_dbpedia_search2graph (1)

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Do a full text search in DBpedia and load triples from results into a local Virtuoso graph.Do a full text search in DBpedia and load result resource triples into a local Virtuoso graph.

Created: 2009-11-27

Credits: Francois Belleau

Beanshell Test (1)

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A test workflow that uses beanshell services

Created: 2009-11-10

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Presentation - myExperiment Supporting social curati...

Created: 2009-10-15 14:56:51 | Last updated: 2009-10-15 15:08:51

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TestCoin

Created: 2009-10-12 22:09:35

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John Casson's Pack

Created: 2009-09-11 11:56:26 | Last updated: 2009-09-11 11:59:54

4 items in this pack

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John Casson Likes This

Created: 2009-09-11 11:47:15

Credits: Jcasson

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: TIFF image

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Presentation - A Web Science Perspective on the Futu...

Created: 2009-09-06 10:40:25 | Last updated: 2009-09-06 10:40:59

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Presentation - Web Science in 20mins

Created: 2009-09-01 12:00:43 | Last updated: 2009-09-01 12:02:48

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EU Call for proposals for Machine translations for t...

Created: 2009-08-12 16:23:18 | Last updated: 2009-08-12 16:27:11

Credits: Denis costello

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Adobe PDF

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Yang-Pack-001

Created: 2009-08-06 07:08:42

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Wheeler-Feynman-Bohm Quantum Potential for Open Cohe...

Created: 2009-07-28 22:09:45

Credits: JackSarfatti

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Adobe PDF

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Presentation - Web 2 Revisited

Created: 2009-07-25 18:02:26 | Last updated: 2009-07-25 22:57:16

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Quantum Field Theory in Rotating Frames

Created: 2009-07-24 00:42:47

Credits: JackSarfatti

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Adobe PDF

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Presentation - myExperiment: Repository | VRE | Expe...

Created: 2009-07-22 12:03:56 | Last updated: 2009-07-22 12:04:26

Credits: Jiten Bhagat

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Adobe PDF

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Rotating superconductors (work in progress) 1

Created: 2009-07-22 02:49:04

Credits: JackSarfatti

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Adobe PDF

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Einstein and Mythology : The Lengthier the Relations...

Created: 2009-07-19 03:45:35

Credits: M. Kirsh

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

File type: Adobe PDF

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Sarfatti DICE 2009 Talk (expanded with Levit)

Created: 2009-07-19 00:40:36

Credits: JackSarfatti

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Adobe PDF

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Coupling of gravity to matter fields

Created: 2009-07-19 00:37:41

Credits: JackSarfatti

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Adobe PDF

Comments: 0 | Viewed: 20 times | Downloaded: 338 times

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getGoTermsFromUniprotId (1)

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This service is invoking UniprotAPI to retrive GOTerms associated with the list of UniprotIds provided in the input. It is using Axis2 webservice created using UniprotAPI and published with wsdl. Example uniprotIds for input: "A2ABK7", "A2ABK8", "A2ABK9"

Created: 2009-07-09 | Last updated: 2009-07-09

Credits: Jelena (Obradovic) Dreskai

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Paolo's talks

Created: 2009-07-08 14:56:51 | Last updated: 2010-03-26 14:09:41

3 items in this pack

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makorin

Created: 2009-06-29 09:33:53

Credits: Leyu

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Adobe PDF

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Presentation - A Web 2.0 Virtual Research Environmen...

Created: 2009-06-19 21:37:28 | Last updated: 2009-06-19 21:56:40

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Presentation - Science 2.0 and the Future of Publishing

Created: 2009-06-08 23:22:19 | Last updated: 2009-06-08 23:24:54

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Presentation - myExperiment: Towards Research Objects

Created: 2009-06-08 23:15:32 | Last updated: 2009-06-08 23:16:47

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Retrieve sequence in EMBL format (1)

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This workflow retrieves a sequence associated with its features in embl format

Created: 2009-05-25

Credits: Tilsith

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MyExperiment RDF slides

Created: 2009-05-15 17:15:03

Credits: David R Newman

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: PowerPoint presentation

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Info feeds

Created: 2009-03-22 18:19:46 | Last updated: 2009-03-22 18:24:36

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test pack

Created: 2009-02-27 15:18:28 | Last updated: 2009-02-27 15:18:43

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testPack

Created: 2008-12-10 20:00:07

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Warn - message parameter (1)

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The warn service displays a warning dialog with no title but message 'Some message'. When the user presses OK the string 'answer' is passed to the answer port of the warn service and so to the output of the workflow.

Created: 2008-09-27

Credits: Alan Williams

Warn - title parameter (1)

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The warn service displays a warning dialog with 'Some title' but no message. When the user presses OK the string 'answer' is passed to the answer port of the warn service and so to the output of the workflow.

Created: 2008-09-27

Credits: Alan Williams

Warn - no parameters (1)

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The warn service displays a prompt with no title or message. When the user presses OK the string 'answer' is passed to the answer port of the warn service and so to the output of the workflow.

Created: 2008-09-27

Credits: Alan Williams

Tell - message parameter (1)

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The tell service displays an informative dialog with no title but with message 'Some message'. When the user presses OK the string 'answer' is passed to the answer port of the tell service and so to the output of the workflow.

Created: 2008-09-27

Credits: Alan Williams

Tell - title parameter (1)

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The tell service displays an informative dialog with 'Some title' but no message. When the user presses OK the string 'answer' is passed to the answer port of the tell service and so to the output of the workflow.

Created: 2008-09-27

Credits: Alan Williams