All content

View Download

ISA-TAB-Nano templates in vivo (MOD-ENP-TOX)

Created: 2016-02-26 13:34:38

Credits: Hanne Vriens

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Trident (Package)

Comments: 0 | Viewed: 88 times | Downloaded: 10 times

View Download

ISA-TAB-Nano templates in vitro (MOD-ENP-TOX)

Created: 2016-02-26 13:32:14

Credits: Hanne Vriens

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Trident (Package)

Comments: 0 | Viewed: 39 times | Downloaded: 8 times

Get targets for compound (1)

• Download

This workflow retrieves single protein targets for a compound from open PHACTS.

Created: 2016-02-22

Credits: Kristina Hettne Eelke van der Horst Aylin Metzner

Get similar phenotypes for a disease and a... (1)

• Download

This workflow retrieves the similar phenotypes between a disease and a gene based on the Monarch services at http://monarchinitiative.org/page/services. Phenotype similarity is calculated based on OwlSim, see http://owlsim.org.

Created: 2016-02-22

Credits: Kristina Hettne

View Download

Experiment

Created: 2016-01-20 00:05:11

0 items in this pack

Comments: 0 | Viewed: 81 times | Downloaded: 12 times

This Pack has no tags!

Scan range splitting for untargeted metabo... (1)

• Download

This workflow analyzes untargeted HPLC-Orbitrap measurements split into separate or alternating scan ranges. The input nodes expect OpenMS consensusXML files that were exported using TextExporter. The workflow then combines the separate scan ranges, filters them utilizing blank and QC measurements, and performs a statistical analysis.Requirements:- KNIME Interactive R Statistics Integration

Created: 2016-01-14 | Last updated: 2016-01-14

Credits: Marc Rurik

TTPish workflow for MASSyPup64 with text s... (1)

• Download

This proteomics workflow performs a comet search and subsequently a validation of the results with PeptideProphet/Protein Prophet. Results are exported in various formats, to facilitate the downstream evaluation in other programs and the sharing of data (EXCEL, csv, mzIdentML).Contrary to a standard Trans-Proteomic-Pipeline (TPP) installation, the workflow can be to mass spectrometry data in whatever localization (i.e. the files do not have to be uploaded/ copied to a special directory).The w...

Created: 2015-12-10

Credits: Robert Winkler

View Download

Long list of stopwords

Created: 2015-12-07 14:46:51

Credits: Magnus Palmblad

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Excel workbook

Comments: 0 | Viewed: 63 times | Downloaded: 15 times

This File has no tags!

View Download

Example results from the UniProt Protein Protein Net...

Created: 2015-12-04 14:50:06

Credits: Magnus Palmblad Yassene

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: PNG image

Comments: 0 | Viewed: 98 times | Downloaded: 25 times

Author Publications and Citations by Year ... (1)

• Download

This workflow demonstrates how to connect to and use Europe PMC (http://europepmc.org/RestfulWebService) to count the number of publications and citations per year for one author. Two Web service calls are made. First, we searchPublications to retrieve the bibliographic records for all published work of a single author. Then, we getCitations to extract the year of all articles citing the work of this author. The pubYear fields is extracted from the raw Web service results and fed to an Rshel...

Created: 2015-12-04

Credits: Magnus Palmblad