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Workflow RCOMM 2012 Sudoku Challenge: 1 - Generate ... (1)

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Process from the http://rcomm2012.org live data mining challenge. The task was to partially solve a Sudoku puzzle by solving three subtasks. Processes 1-3 in this pack are the actual solutions to the tasks, process 0 loads the required data into your repository and process 4 is the bonus that solves the entire puzzle. This process loads the numbers 1..9 and uses two Cartesian Product operators to compute the set of all combinations x, y, v. Finally we compute the index of the 3x3 sub-field a...

Created: 2012-09-04

Workflow RCOMM 2012 Sudoku Challenge: 0 - Get Data (1)

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Process from the http://rcomm2012.org live data mining challenge. The task was to partially solve a Sudoku puzzle by solving three subtasks. Processes 1-3 in this pack are the solutions to the actual tasks, process 0 loads the required data into your repository and process 4 is the bonus that solves the entire puzzle. This process loads the two required data sets from rapid-i.com and stores them in your repository. The first data set contains the numbers 1 to 9 and the second contains the pr...

Created: 2012-09-04

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Blob Bonn Taverna Presentation - Case Studies

Created: 2012-09-04 10:17:41 | Last updated: 2012-09-04 13:45:55

Credits: User Helen Hulme User Katy Wolstencroft User Paul Fisher User Shoaib Sufi User Mcornell User Robert Haines

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 Presentation comparing and contrasting Taverna workbench use on two case studies: 1. African Sleeping Sickness (Trypanosomiasis) Wellcome Trust Project 2. NHS / TSB SNP annotation pipeline

File type: PowerPoint 2007 presentation

Comments: 0 | Viewed: 51 times | Downloaded: 41 times

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Blob Bonn Tutorial REST services

Created: 2012-09-03 19:34:12

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a brief introduction to using REST servicces through Taverna

File type: PowerPoint presentation

Comments: 0 | Viewed: 67 times | Downloaded: 53 times

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Blob Bonn Tutorial Different Service Types

Created: 2012-09-03 19:32:32

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thie tutorial introduces you to using different types of services with Taverna - e.g. asynchronous, biomart and soaplab

File type: PowerPoint presentation

Comments: 0 | Viewed: 37 times | Downloaded: 45 times

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Workflow Associate Active Regions and Filaments to ... (1)

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This workflow is querying the HEC for the fastest 100 CME of a given list (input parameter); it calculates the latitude from the postion angle; last step is to query the HFC for Active Regions and Filaments for the given time where the bounding box of the feature contains the longitude (feature must be on the correct side of the Sun.) Inputs: HEC list name (must contain fields: v, time_start, pa_width, pa) Outputs: v, time_start, pa_width, pa of the 100 fastest CME, VOTables for associated A...

Created: 2012-09-03

Credits: User Anja Le Blanc

Workflow Retention Time Prediction with X!Tandem (1)

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This workflow identifies peptides from tandem mass spectra using X!Tandem as in a standard installation of the Trans-Proteomic Pipeline (TPP, version 4.6, but earlier versions should also work). The peptide-spectrum matches are validates using PeptideProphet (also from a standard installation of TPP) and peptides with at least a probability 0.95 are used to train a linear retention time predictor (Palmblad et al., 2002), whereby retention coefficients are also derived. These indirectly provid...

Created: 2012-09-03 | Last updated: 2012-09-03

Credits: User Magnus Palmblad User Yassene User Eleni

Attributions: Blob rt3.c

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Blob rt3.c

Created: 2012-09-03 10:36:54 | Last updated: 2012-09-03 10:42:13

Credits: User Magnus Palmblad

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Linear retention time prediction training rt, version 3.0 with improved command-line interface and format options.

File type: Trident (Package)

Comments: 0 | Viewed: 44 times | Downloaded: 21 times

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Workflow Get completion function V / Vm using the a... (1)

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Get completion function V / Vm using the apparent magnitude list of a set of galaxies

Created: 2012-09-03 | Last updated: 2012-09-03

Credits: User Julian Garrido

Workflow NCBI Protein Clustal Omega Alignment (1)

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Searches NCBI Proteins for a given organism and protein. User VMatch (xmknr) Vmatch, a versatile software tool for efficiently solving large scale sequence matching tasks to remove possible dubplcate and clustal omega to generate a multiple sequence alignment. Clustal Omega is the latest addition to the Clustal family. It offers a significant increase in scalability over previous versions, allowing hundreds of thousands of sequences to be aligned in only a few hours. It will also make u...

Created: 2012-08-31

Credits: User Carol Lushbough

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