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Longitude with beanshell (1)

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This workflow takes in a string value or list of values and pulls out longitude coordinates formatted as ###-##(N or S) using the following regular expression: \d\d\d-\d\d(E|W). The coordinates are processed and formatted to be in the form required by the web service used in my "Elevation plot" workflow. This workflow primarily contains string manipulation. For many of the text and list services used, the beanshell script needed to be modified in order to produce the formatti...

Created: 2011-10-06 | Last updated: 2011-10-06

Credits: Chrisser

Latitude with beanshell (1)

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This workflow takes in a string value or list of values and pulls out latitude coordinates formatted as ##-##(N or S) using the following regular expression: \d\d-\d\d(N|S). The coordinates are processed and formatted to be in the form required by the web service used in my "Elevation plot" workflow. This workflow contains primarily string manipulation. For many of the text and list services used, the beanshell script needed to be modified in order to produce the formatting I requi...

Created: 2011-10-06 | Last updated: 2011-10-06

Credits: Chrisser

Elevation plot v.2 (2)

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Functionally identical to the original. I tried to upload a version with annotation, but somehow the notes didn't make it to myExperiment. From the prior verion: This workflow accepts city and country names as user-supplied input. These value are supplied to the GetWeather webservice (http://www.webservicex.net/globalweather.asmx?WSDL), which returns an XML record of location and weather info for each recognized city. (See the uploaded photo "weather example") The XML returned fr...

Created: 2011-10-06 | Last updated: 2011-10-06

Credits: Chrisser

Get Element ID from Gzipped GenBank file (1)

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This workflow gunzips a *.gbk.gz file, converts it to XML (via agavewriter) and finds the Element ID. Does not work on *.gz files larger than 10MB. I upped the JVM settings on Taverna to:         <key>VMOptions</key>         <string>-Xmx4096m -XX:MaxPermSize=1024m</string> Created my own agave.dtd to get the XPath service to work the XML file generated from the Read_GenBank_File service. You will need to ...

Created: 2011-10-06 | Last updated: 2011-10-06

Credits: Mutanthumb Alan Williams

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NCBI_Entity.mod.dtd

Created: 2011-10-06 03:51:57

Credits: Mutanthumb

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Trident (Package)

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INSD.mod.dtd

Created: 2011-10-06 03:49:45 | Last updated: 2011-10-06 04:06:07

Credits: Mutanthumb

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Trident (Package)

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agave.dtd

Created: 2011-10-06 03:48:27 | Last updated: 2011-10-06 04:05:28

Credits: Mutanthumb

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Trident (Package)

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"Elevation plot..." example output

Created: 2011-10-06 03:32:17 | Last updated: 2011-10-06 03:32:19

Credits: Chrisser

License: Creative Commons Attribution 3.0 Unported License

File type: JPEG image

Comments: 0 | Viewed: 48 times | Downloaded: 30 times

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"Elevation plot..." workflow, expanded view

Created: 2011-10-06 03:29:43 | Last updated: 2011-10-06 03:29:52

Credits: Chrisser

License: Creative Commons Attribution 3.0 Unported License

File type: JPEG image

Comments: 0 | Viewed: 55 times | Downloaded: 33 times

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Workflow compact

Created: 2011-10-06 03:27:24 | Last updated: 2011-10-06 03:27:29

Credits: Chrisser

License: Creative Commons Attribution 3.0 Unported License

File type: JPEG image

Comments: 0 | Viewed: 59 times | Downloaded: 42 times