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Get Element ID from Gzipped GenBank file (1)

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This workflow gunzips a *.gbk.gz file, converts it to XML (via agavewriter) and finds the Element ID. Does not work on *.gz files larger than 10MB. I upped the JVM settings on Taverna to:         <key>VMOptions</key>         <string>-Xmx4096m -XX:MaxPermSize=1024m</string> Created my own agave.dtd to get the XPath service to work the XML file generated from the Read_GenBank_File service. You will need to ...

Created: 2011-10-06 | Last updated: 2011-10-06

Credits: Mutanthumb Alan Williams

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NCBI_Entity.mod.dtd

Created: 2011-10-06 03:51:57

Credits: Mutanthumb

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Trident (Package)

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INSD.mod.dtd

Created: 2011-10-06 03:49:45 | Last updated: 2011-10-06 04:06:07

Credits: Mutanthumb

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Trident (Package)

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agave.dtd

Created: 2011-10-06 03:48:27 | Last updated: 2011-10-06 04:05:28

Credits: Mutanthumb

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Trident (Package)

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"Elevation plot..." example output

Created: 2011-10-06 03:32:17 | Last updated: 2011-10-06 03:32:19

Credits: Chrisser

License: Creative Commons Attribution 3.0 Unported License

File type: JPEG image

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"Elevation plot..." workflow, expanded view

Created: 2011-10-06 03:29:43 | Last updated: 2011-10-06 03:29:52

Credits: Chrisser

License: Creative Commons Attribution 3.0 Unported License

File type: JPEG image

Comments: 0 | Viewed: 43 times | Downloaded: 28 times

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Workflow compact

Created: 2011-10-06 03:27:24 | Last updated: 2011-10-06 03:27:29

Credits: Chrisser

License: Creative Commons Attribution 3.0 Unported License

File type: JPEG image

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Weather Example

Created: 2011-10-06 03:24:49 | Last updated: 2011-10-06 03:24:50

Credits: Chrisser

License: Creative Commons Attribution 3.0 Unported License

File type: JPEG image

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TestGzippedGbk4

Created: 2011-10-06 03:21:52 | Last updated: 2011-10-06 04:00:24

Credits: Mutanthumb

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: application/x-gzip

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[untitled] (1)

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This workflow ...tbc img, #cubbies-overlay{ -moz-transition-property: margin, box-shadow, z-index; -moz-transition-duration: 0.1s; -webkit-transition-property: margin, box-shadow, z-index; -webkit-transition-duration: 0.1s; } .cubbies-selected{ z-index: 9999; box-shadow: 3px 3px 8px -1px blue !important; cursor: pointer !important; margin: -3px 3px 3px -3px; } .cubbies-selected:active{ box-shadow: 2px 2px 5px -1px darkblue !important; margin: -1px 1px 1px -1px; } #cubbies-overlay{ positio...

Created: 2011-10-06 | Last updated: 2011-10-06

Credits: Chrisser