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Cataloguing Workflow 2 (1)

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Workflow example. Not to be used. Only for OJAX++ synchronisation.

Created: 2011-06-11 | Last updated: 2011-06-11

Credits: Fbracken

Retrieval of molecular interactions within... (1)

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Description of the flow steps: 1. split the list of identifiers using allows separators, 2. build a MIQL query with these identifier in preparation of running a PSICQUIC request, 3. Retrieve molecular interaction from IntAct's PSICQUIC service using the generated MIQL statement, 4. filter the list of returned MITAB using the list of identifiers and only keep those lines where both participating molecules are members of the input list, 5. return the count and list of filtered MITAB lines.

Created: 2011-06-10 | Last updated: 2011-06-10

Credits: Skerrien

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APO-SYS Toolbox

Created: 2011-06-10 14:24:10 | Last updated: 2011-06-10 15:11:25

11 items in this pack

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blastn and blastx (1)

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This workflow accepts an url of a fasta file as input and performs an NCBI blastn at the EBI against the bacteria database and an NCBI blastx against the uniref90 database.  From the blast results of the blastx the hit with the lowest e-value is taken and the GO is returned. Output is blastx and blastn results and GO from the first hit of the blastx.   Based on Katy Wolstencroft & Hamish McWilliam EBI_NCBI_BLAST http://www.myexperiment.org/workflows/1765.html

Created: 2011-06-08 | Last updated: 2011-06-08

Credits: Niek

Bash example from the NGS community contri... (1)

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  BASH Simple workflow that executes "ls" on the command line in the directory "/".

Created: 2011-06-07

Credits: Baj

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Description of RapidMiner plugin video part 2

Created: 2011-06-06 11:56:45 | Last updated: 2011-06-06 11:57:42

Credits: James Eales

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Plain text

Comments: 0 | Viewed: 60 times | Downloaded: 35 times

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Description of RapidMiner plugin video part 1

Created: 2011-06-06 11:55:39 | Last updated: 2011-06-06 11:56:18

Credits: James Eales

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Plain text

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Download the ONS solubility data from Goog... (1)

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 Use the Bioclipse scripting langauge to authenticate with Google Docs, and download the Open Notebook Science solubility data into a local data structure.

Created: 2011-06-06 | Last updated: 2011-06-06

Credits: Egon Willighagen

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Test pack for relationships

Created: 2011-06-03 12:48:10 | Last updated: 2013-01-10 09:00:32

4 items in this pack

Comments: 1 | Viewed: 15 times | Downloaded: 5 times

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