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Pack Example R workflows


Created: 2010-12-13 10:44:04 | Last updated: 2010-12-13 16:28:58

Small workflows illustrating how R can be used within Taverna services

10 items in this pack

Comments: 0 | Viewed: 97 times | Downloaded: 40 times

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Workflow Loop Repository and Append Data (1)

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This process flow loops through all exampleset '.ioo' files in a repository directory and appends their values. It can also be used as a template for batch processing on different repository entries, or for general data appending.

Created: 2010-12-10 | Last updated: 2010-12-10

Workflow Using R to add two columns (1)

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This process shows a simple R script which adds two columns of a data set with R. Of course this is much simpler by using the operator "Generate Attributes" which is done in parallel, but maybe some of you find this short process helpful in order to get started with R.

Created: 2010-12-10 | Last updated: 2010-12-10

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Pack Presentation - Why Linked Data is Not Enough for Sci...


Created: 2010-12-09 22:18:43 | Last updated: 2010-12-10 01:58:30

Title: Why Linked Data is Not Enough for Scientists Speaker: David De Roure Event: Sixth IEEE e–Science Conference Event URI: http://www.escience2010.org Location: Brisbane, Australia Date: Friday, December 10, 2010 Formats: .ppt

2 items in this pack

Comments: 0 | Viewed: 47 times | Downloaded: 10 times

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Workflow ART-2a Classification Result As PDF (2)

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This workflow classifies a given CSV file with the ART-2a algorithm. The results are visualized in a PDF file. The QSAR data is loaded from a CSV file and converted into a fingerprint items list which is the suitable data type for the ART-2a algorithm.

Created: 2010-12-09 | Last updated: 2011-07-21

Workflow Curate QSAR descriptor CSV file (2)

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This workflow erases descriptor entries which were not calculated. The QSAR data is loaded from a CSV file and afterwards processed by the Curate_QSAR_Vector worker. At the end the curated CSV file is written to hard disk.

Created: 2010-12-09 | Last updated: 2011-07-21

Workflow Merge QSAR descriptor CSV files (3)

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This workflow merges QSAR descriptor CSV files into a single CSV file. The workflow loads the CSV files from hard disk and builds a single QSAR descriptor vector. Afterwards the vector is converted in one single CSV file and saved to hard disk.

Created: 2010-12-09 | Last updated: 2011-07-21

Creator

Pack Presentation - The Evolution of myExperiment


Created: 2010-12-09 05:11:17 | Last updated: 2010-12-09 05:49:11

Title: The Evolution of myExperiment Speaker: David De Roure Event: Sixth IEEE e–Science Conference Event URI: http://www.escience2010.org Location: Brisbane, Australia Date: Thursday, December 9, 2010 Formats: .ppt and .pptx  

2 items in this pack

Comments: 0 | Viewed: 20 times | Downloaded: 6 times

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Pack Text Mining Workflows


Created: 2010-12-08 11:55:03 | Last updated: 2011-02-01 11:33:11

This pack contains workflows to navigate from candidate Quantitative Trait genes and pathways to a given phenotype.

5 items in this pack

Comments: 0 | Viewed: 210 times | Downloaded: 67 times

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Workflow Extract Scientific Terms (2)

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This workflow takes in a document containg text and removes and non-ascii characters. The cleaned text is then sent to a service in dresden to extract all scientific terms. These terms represent a profile for the input document. Any null values are also removed.

Created: 2010-12-08 | Last updated: 2011-01-11

Credits: User Paul Fisher

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