All content

KEIO Bioinformatics Web Service - a genera... (2)

• Download

This workflow generates a sequence logo image for a set of amino acid sequences of FOXP2 gene, by downloading the amino acid sequences in Fasta format through Togo Web Service with UniProt identifiers (togoWS, provided by the G-language Genome Analysis Environment SOAP Service), running BLAST web service (runBLAST), retrieving a set of sequences from ID list (togoWS), aligning the sequence with MUSCLE (runMUSCLE), extracting a certain region from the alignment (extractalign, provided by Soapl...

Created: 2010-08-13 | Last updated: 2010-11-19

Credits: cory (Kazuki Oshita)

View Download

haarcascade fullbody

Created: 2010-08-13 13:33:54 | Last updated: 2010-08-13 13:33:56

Credits: Wladi

License: BSD License

File type: XML

Comments: 0 | Viewed: 155 times | Downloaded: 721 times

View Download

haarcascade eye tree eyeglasses

Created: 2010-08-13 13:29:17 | Last updated: 2010-08-13 13:29:19

Credits: Wladi

License: BSD License

File type: XML

Comments: 0 | Viewed: 253 times | Downloaded: 1058 times

Visualize the boiling point data from the ... (1)

• Download

 Downloads the RDF data from a HTML page, extracts the boiling point data, calculates atom counts from SMILES representations, and opens the data in a matrix editor, ready to be visualized in a scatter plot.

Created: 2010-08-10 | Last updated: 2010-08-10

Credits: Egon Willighagen

View Download

Presentation - Integrating, Representing and Reasoni...

Created: 2010-08-10 13:48:11 | Last updated: 2010-08-10 13:50:31

1 item in this pack

Comments: 0 | Viewed: 23 times | Downloaded: 8 times

This Pack has no tags!

Generate CombiUgi library (1)

• Download

Generates a CombiUgi library using data from a Goolgle spreadsheet containing smiles strings of compounds to undergo virtual Ugi reactions

Created: 2010-08-10 | Last updated: 2010-08-10

Credits: Peter Li Romney

Predict Abraham descriptors (1)

• Download

Predicts descriptor values using a model derived from a linear regression analysis of the Open Notebook Science solubility data and literature values. The workflow returns all the Abraham descriptors E, S, A, B and V in a HTML file.Predicts descriptor values using a model derived from a linear regression analysis of the Open Notebook Science solubility data and literature values

Created: 2010-08-05 | Last updated: 2010-08-05

Credits: Peter Li

AUTOSTRUCTURE (4)

• Download

This is a simple workflow designed to run AUTOSTRUCTURE with an user selected input. The code is a full implementation of the program AUTOSTRUCTURE developed by N. R. Badnell. The entire capability of the original program for arbitrary structure, Auger rate and Radiative rate calculation has been retained. However input driver file selection, driver templates, output selection and output routing have been enabled within the ADAS framework to simplify the production of two types of data, name...

Created: 2010-08-04 | Last updated: 2011-02-27

Count the number of MetaPrint2D predicted ... (1)

• Download

 MetaPrint2D (doi: 10.1186/1471-2105-11-362) is used to calculate the number of red, orange, and green markers that indicate how likely an atom in the drug is metabolized (read the paper for the fine prints). It counts them for each molecule and reports them, as a set of three molecular descriptors that could potentially correlate with how well the molecule is metabolized (hypothesis).

Created: 2010-08-04 | Last updated: 2010-08-04

Credits: Egon Willighagen

Create an OpenTox API dataset and add mole... (2)

• Download

 Bioclipse script that creates a data set  at an OpenTox API capable server, and adds molecules to it.

Created: 2010-08-04 | Last updated: 2010-11-13

Credits: Egon Willighagen