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AlitoraKDAInputModule test workflow (1)

 This workflow calls the AlitoraKDAInputModule service from the test GenePattern server.

Created: 2010-07-07 | Last updated: 2010-07-07

Credits: Peter Li

Pivoting with Consideration of Example Wei... (1)

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This process shows how the Pivoting operator can also consider example weights encoded by a special attribute with the role 'weight'. The first operators only create a demo data set for this purpose, the actual pivoting is performed by the last operator only. I recommend to place a breakpoint before the Pivoting and check the data (structure) in order to see how the Pivoting handles the weights.

Created: 2010-07-07

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NCBI Entrez Utilities Web service set description file

Created: 2010-07-06 14:40:27 | Last updated: 2010-07-06 14:42:59

Credits: Alex Nenadic

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 28 times | Downloaded: 83 times

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NCBI Entrez Utilities Web service set

Created: 2010-07-06 14:17:35 | Last updated: 2010-07-22 13:17:33

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CTF - MEG Event Averager (1)

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This workflow applies parametrs in a user-specified processing.cfg file to a set of MEG data files. The datasets must be in CTF-format, such as those produced by Omega275 systems. The processing.cfg file and datasets are selected at the initialization of the workflow.  processing.cfg can be created by the data inspection tool DataEditor, and contains desired filter settings etc. This file can also be edited easily with a text editor to tweak settings. The workflow identifies all the trig...

Created: 2010-07-06 | Last updated: 2010-07-06

Credits: Lakelander

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Presentation - Repositories and Linked Open Data: th...

Created: 2010-07-06 08:05:27 | Last updated: 2010-07-06 11:41:18

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A template example workflow using U-Compar... (2)

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An example workflow using the U-Compare text mining system inside embedded. Users can easily make their own workflow with U-Compare reusing this workflow. This workflow retrieves abstract texts from Pubmed with user specified query, inputs the texts to U-Compare, interprets the output of U-Compare. You have to download and store the UIMA CPE XML descriptor file (StdinPPIExtraction-CPE-EventMine.xml) to run the default setting, which runs a event extraction text mining workflow by U-Compare. S...

Created: 2010-07-05 | Last updated: 2010-09-02

Credits: Yoshinobu Kano

Phenotype to pubmed (3)

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This workflow takes in a phenotype search term, and searches for abstracts in the PubMed database. These are passed to the eSearch function and searched for in PubMed. Those abstracts found are returned to the user

Created: 2010-07-05 | Last updated: 2011-01-11

Credits: Paul Fisher

Gene to Pubmed (3)

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This workflow takes in a list of gene names and searches the PubMed database for corresponding articles. Any matches to the genes are then retrieved (abstracts only). These abstracts are then returned to the user.

Created: 2010-07-05 | Last updated: 2011-01-26

Credits: Paul Fisher

Perfrom a text based search through PubMed (1)

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This workflow takes in a number of search terms in which to perform a search over the PubMed literature database. These search terms may be input as if entered in the web based version of PubMed. The output from this workflow is a list of PubMed identifiers in xml based format

Created: 2010-07-05 | Last updated: 2010-07-05

Credits: Paul Fisher