Tag Results

Items tagged with "image" (70)

Note: some items may not be visible to you, due to viewing permissions.


Files (1)

Blob Wound Image Data Mining

Created: 2011-04-17 14:00:45 | Last updated: 2011-05-04 12:35:28

Credits: User Dr. Sven Van Poucke

Attributions: Workflow Wound Image Data Mining Blob Wound Image Data Mining

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The aim of research behind this file is to discover the way our previously published color-calibration algorithm influences de detection and description of salient points. A recent paper can be found at: http://www.biomedcentral.com/1471-2342/10/7. Other work: Automatic Colorimetric Calibration of Chronic Wound Imaging. S. Van Poucke, Y. Vander Haeghen, K. Vissers, T. Meert, P. G. Jorens BMC Med Imaging. 2010 Mar 18;10:7 Comparative analysis of two methods for wound bed area measur...

File type: Trident (Package)

Comments: 0 | Viewed: 65 times | Downloaded: 31 times

Tags:

Workflows (69)

Workflow Fetch Dragon images from BioMoby (3)

Thumb
Fetch images and annotations of snapdragons

Created: 2008-03-05 | Last updated: 2010-07-14

Credits: User Tomoinn

Workflow Search InChI in ChemSpider (1)

Thumb
This workflows queries ChemSpider for compound information and compound images. Note that a Chemspider security token is needed in order to access some of the ChemSpider services (receive one by registering at ChemSpider). Possible search terms might be InChI codes, ChemSpider identifiers or names.

Created: 2009-03-30 | Last updated: 2009-03-30

Credits: User Michael Gerlich

Workflow Search InChI in NCBI eSearch (pccompound) (1)

Thumb
This workflow takes in a search term (e.g. InChI) for search in PubChem pccompound database. The result is an xml file containing summary information about the search term and also a compound image and the compound webpage fetched from Pubchem.

Created: 2009-03-30 | Last updated: 2009-03-30

Credits: User Michael Gerlich

Workflow MassBank to KEGG (1)

Thumb
Workflow that queries MassBank DB to retrieve database identifiers (KEGG, PubChem, InChI) and continue search with them to retrieve pathways from KEGG for given compound identifier,searches PubChem via eutils and PUG, queries ChemSpider for compound information and image. Note: Usage of ChemSpider web services requires a valid security token - receive one by registering at ChemSpider (look at your profile to see your token)

Created: 2009-03-30 | Last updated: 2009-03-30

Credits: User Michael Gerlich

Workflow Fetch today's xkcd comic (1)

Thumb
Use the local java plugins and some filtering operations to fetch the comic strip image from http://xkcd.com/ Based on the FetchDailyDilbert workflow.

Created: 2009-07-03

Credits: User Stian Soiland-Reyes

Attributions: Workflow Fetch today's xkcd comic

Uploader

Workflow Calculating frequencies of gene expression... (1)

Thumb
This workflow retrieves data from the MaxD microarray database and calculates the frequencies of gene expression levels using an R script

Created: 2010-03-15

Credits: User Peter Li

Uploader

Workflow Construction of skeleton SBML model using ... (1)

Thumb
This workflow generates a skeleton SBML model consisting of the metabolic reactions for a given list of yeast enzymes ORF numbers

Created: 2010-03-26 | Last updated: 2010-03-26

Credits: User Peter Li

Uploader

Workflow Construction of skeleton SBML model using ... (1)

Thumb
This workflow generates a skeleton SBML model consisting of the metabolic reactions for a given subsystem term.

Created: 2010-03-26 | Last updated: 2010-03-26

Credits: User Peter Li

Uploader

Workflow Copasi time simulation of SBML model (1)

Thumb
Uses the synchronous Copasi time simulation web service to predict the concentrations of species over a time period. The results from Copasi are provided in SBRML format which is visualised as a graph using an R script.

Created: 2010-03-26

Credits: User Peter Li

Uploader

Workflow Get compound thumbnail (1)

Thumb
Returns a small image of the 2D structure of given chemical compound represented by its chemspider identifier

Created: 2010-07-13 | Last updated: 2010-07-13

Credits: User Peter Li

Workflow Fetch Dragon images from BioMoby (1)

Thumb
Fetch images and annotations of snapdragons

Created: 2010-07-14 | Last updated: 2010-07-14

Credits: User EdwardKawas User Tomoinn

Attributions: Workflow Fetch Dragon images from BioMoby

Workflow WPS orchestration example, image metadata ... (1)

Thumb
1 image inputs (GeoTIFF, JPEG,PNG), metadata from gdalinfo and histogram analisys, histogram result is a PNG image in base64 coding (default WPS service encoding) that will be converted to binary.

Created: 2011-03-03 | Last updated: 2011-03-03

Credits: User Jorgejesus

Workflow Automated Image Registration (1)

Thumb
This is a simple registration workflow. The structural MRI images are aligned to a standard brain image by using AIR registration tools. To build this workflow follow the steps mentioned on the following pages. URL: http://www.loni.ucla.edu/Software/AIR Try this Pipeline Workflow Now!

Created: 2011-04-06 | Last updated: 2011-04-06

Credits: User Pipeline

Workflow Local Shape Analysis (LSA) Workflow (1)

Thumb
This workflow takes raw un-skull-stripped volumes in 2 groups/populations and an ROI index to generate a color-coded shape object using the per-vertex local p-values of some local shape-measure (e.g., displacement, atrophy, Jacobian, curvature, etc). It also outputs the p-values color-map superimposed on the mean shape. Problem addressed by this workflow   Identifying local group differences between 2 populations in one specific ROI. This workflow also generates mean-shape DX mo...

Created: 2011-04-06 | Last updated: 2011-04-06

Credits: User Pipeline

Workflow BrainParser: Automated Volume Calculation ... (1)

Thumb
This workflow takes raw un-skull-stripped volumes and generates tables of the volumes for all 56 ROIs currently automatically extracted using LONI BrainParser.   Problem addressed by this workflow Computing and tabulating the Brain Volumes of 56 cortical and sub-cortical ROIs. This workflow also generates DX models of all 56 ROIs which can be viewed as a scene in ShapeViewer.   Detailed Workflow Usage & Specifications Input: Any volumetric file format can be use...

Created: 2011-04-06 | Last updated: 2011-04-06

Credits: User Pipeline

Workflow Image Registration Meta Algorithm (IRMA) (1)

Thumb
Overview - Workflow-Title In this workflow different registration algorithms are applied to the same image and the image that is best registered to the template is chosen as the output top candidate.   Problem addressed by this workflow In this workflow various registration algorithm is performed on the same subject. The algorithm that gives the best result is chosen. This might be different for different input images. This workflow is robust and picks the best-registered imag...

Created: 2011-04-06 | Last updated: 2011-07-14

Credits: User Pipeline

Workflow CGR from multiple fasta files (1)

Thumb
 The workflow generates Chaos Game Represenations (CGR) image from multiple fasta files. See http://www.g-language.org/wiki/cgr for more information about the Chaos Game Representations.

Created: 2011-04-29 | Last updated: 2011-04-29

Credits: User cory (Kazuki Oshita)

Uploader

Workflow Extract histogram features from image file (1)

Thumb
As a template for creation of image workflows was used xa-toolwrapper project from Sven Schlarb (https://github.com/openplanets/scape/tree/master/xa-toolwrapper). This project enables creation of WSDL web service that wraps command line tool like ‘extractFeatures’ or ‘create’. The workflow for ‘extractFeatures’ tool has two input parameters. The URL to the input image file and the number of histogram bins as integer. This workflow extracts histogram feature...

Created: 2011-06-16 | Last updated: 2012-04-04

Credits: User Roman

Uploader

Workflow Compare histogram features of image files (1)

Thumb
As a template for creation of image workflows was used xa-toolwrapper project from Sven Schlarb (https://github.com/openplanets/scape/tree/master/xa-toolwrapper). This project enables creation of WSDL web service that wraps command line tool like ‘extractFeatures’ or ‘create’. The workflow for ‘compare’ tool has three input parameters. These are two URLs to the XML histogram files that comprise information about image features. These files are acquired us...

Created: 2011-06-16 | Last updated: 2012-04-04

Credits: User Roman

Uploader

Workflow Extract histogram features from image file... (1)

Thumb
The main element of this workflow is a RESTful service designed in the SCAPE QA command line tools RESTful package https://github.com/openplanets/scape/tree/master/pc-qa-toolwrapper-rest. The Github project https://github.com/openplanets/scape/tree/master/xa-rester from Andy Jackson is a basis implementation for pc-qa-toolwrapper-rest package. The QA REST package enables creation of RESTful web service that wraps QA command line tool like ‘extractfeatures’ or ‘create’...

Created: 2011-07-01 | Last updated: 2012-04-04

Credits: User Roman

Uploader

Workflow Common SCAPE QA command line tool RESTful ... (1)

Thumb
The QA REST package enables creation of RESTful web service that wraps any QA command line tools. The main element of this workflow is a RESTful service designed in the SCAPE QA command line tools RESTful package https://github.com/openplanets/scape/tree/master/pc-qa-toolwrapper-rest. The Github project https://github.com/openplanets/scape/tree/master/xa-rester from Andy Jackson is a basis implementation for pc-qa-toolwrapper-rest package. The workflow comprises path to the RESTful servi...

Created: 2011-07-01 | Last updated: 2012-04-04

Credits: User Roman

Uploader

Workflow Image metadata extraction (1)

Thumb
This workflow invokes the gdalinfo service and will list various information about a GDAL supported raster dataset of the image ( GeoTIFF, PNG, JPEG and GIF.).

Created: 2011-08-31 | Last updated: 2011-08-31

Credits: User Harvey

Uploader

Workflow TIFF to PNG (1)

Thumb
This workflow can convert Image format from TIFF to PNG. This workflow is one of the example for GENESI-DEC ontology.

Created: 2011-08-31 | Last updated: 2011-08-31

Credits: User Harvey

Uploader

Workflow Fetch today's cat and girl comic (1)

Thumb
Use the local java plugins and some filtering operations to fetch the comic strip image from http://catandgirl.com/, your major source of essential lead. Based on the Fetch today's xkcd workflow.

Created: 2011-09-14 | Last updated: 2011-09-14

Credits: User Atminer

Attributions: Workflow Fetch today's xkcd comic

Workflow Geottif image reprojection (1)

Thumb
Example of a WPS service that reprojects a geoTIFF by using a EPSG code. THe example image is in EPSG:32119, lcc projection for north caroline and it comes from GRASS-GIS spearfish dataset. The image is reprojected into EPSG:4326 (lat/long): Metadata: http://rsg.pml.ac.uk/wps/generic.cgi?request=describeProcess&service=wps&identifier=reprojectImage&version=1.0.0 Library: gdalwarp

Created: 2011-09-16 | Last updated: 2011-09-16

Credits: User Jorgejesus

Uploader

Workflow Fetch a cat and girl comic (1)

This workflow retrieves the cat and girl comic whose name is specified in the URL constant.

Created: 2011-09-28 | Last updated: 2011-09-28

Credits: User Atminer

Workflow r.stats workflow for pixel statistics (1)

Thumb
r.stats operation for image. Output will group pixels by: DN, total area, relative %. This worflow is used inside the ice Class exampel as a nested workflow

Created: 2011-11-02 | Last updated: 2011-11-02

Credits: User Jorgejesus

Workflow Calculate edit distance based on words (1)

Thumb
 Calculate the word based edit distance between a scan of an OCR image and its ground truth.

Created: 2011-11-14 | Last updated: 2011-11-14

Credits: User perdalum

Uploader

Workflow Image files comparison using histograms an... (2)

Thumb
This workflow extracts histogram and profile features from image file applying image processing command line tool. Necessary configuration files are stored on Github (https://github.com/openplanets/scape/tree/master/pc-qa-toolwrapper). As a template for creation of image workflows was used xa-toolwrapper project from Sven Schlarb (https://github.com/openplanets/scape/tree/master/xa-toolwrapper). This workflow provides WSDL web service that wraps command line tool with tho options ‘extra...

Created: 2011-11-22 | Last updated: 2011-11-23

Credits: User Roman

Workflow dcraw (sRGB, ColorInterpolated, FixedWhite... (2)

Thumb
Reads a RAW image with these parameters using dcraw and returns the image data as byte array.

Created: 2011-12-08 | Last updated: 2011-12-16

Workflow dcraw (sRGB, ColorInterpolated, FixedWhite... (2)

Thumb
Reads a RAW image with these parameters using dcraw and returns the image data as byte array.

Created: 2011-12-08 | Last updated: 2011-12-16

Workflow dcraw (NoConversion, NoInterpretation, Fix... (4)

Thumb
Reads a RAW image with these parameters using dcraw and returns the image data as byte array.

Created: 2011-12-08 | Last updated: 2011-12-16

Workflow Convert by target path (1)

Thumb
Converts a file to a target format depending on the target path extension.

Created: 2012-02-21 | Last updated: 2012-08-14

Credits: User Markus Plangg

Workflow Get image mimetype (1)

Thumb
Returns the mimetype of an image.

Created: 2012-02-21 | Last updated: 2012-02-21

Credits: User Markus Plangg

Workflow RAWverna Image evaluation - Read images (R... (1)

Thumb
Reads images for evaluation by RAWverna. The read parameters depend on the type of the images.

Created: 2012-02-21 | Last updated: 2012-02-21

Credits: User Markus Plangg

Workflow RAWverna Image evaluation - Read Image (RAW) (1)

Thumb
Reads an image from the given path using dcraw for image comparison.

Created: 2012-02-21 | Last updated: 2012-02-21

Credits: User Markus Plangg

Workflow RAWverna image evaluation - Read images (RAW) (1)

Thumb
Reads RAW images for evaluation by RAWverna.

Created: 2012-02-21

Credits: User Markus Plangg

Workflow RAWverna Image Evaluator - Evaluate Equals (1)

Thumb
Takes two images as byte array and compares them for equality using the RAWverna Image Evaluator.

Created: 2012-02-21 | Last updated: 2012-02-21

Credits: User Markus Plangg

Workflow RAWverna Image Evaluator - Evaluate relative (1)

Thumb
Takes two images as byte array and compares them using the RAWverna Image Evaluator.

Created: 2012-02-21 | Last updated: 2012-02-21

Credits: User Markus Plangg

Uploader

Workflow Anatomical Atlas Generation (1)

Thumb
Computes an anatomical atlas based on a set of patient images using registration methods. This workflow is automatic and does not require user interaction. The anatomical atlas is composed of a mean image and the set of transformations for each patient's between the mean image and the patient image. The atlas can be used to segment the mean image once and propagate the segmentation results to each patient image automatically. This workflow has been tested using GIMIAS-1.5 (open source) with ...

Created: 2012-05-29 | Last updated: 2012-05-29

Credits: User Gimias

Workflow Image Characterisation - Fits (Simple) (1)

Thumb
Extracts metadata from images.

Created: 2012-02-27 | Last updated: 2012-02-27

Credits: User Markus Plangg

Workflow Image Characterisation - Fits (Extended) (1)

Thumb
Extracts metadata from images.

Created: 2012-06-06 | Last updated: 2012-06-06

Credits: User Markus Plangg

Workflow Simple executable plan example (1)

Thumb
A simple executable plan containing a migration action component and a QA component. The migration action uses imagemagick convert. The QA component consists of two characterisation components (fits) and another QA components (imagemagick compare).

Created: 2012-06-29

Credits: User Markus Plangg

Uploader

Workflow HFC Synoptic map from date (1)

Thumb
query the HELIO Feature Catalogue, and retrieves the image with all the features catalgued for certain date.

Created: 2012-11-05

Credits: User David PS

Uploader

Workflow AIT Matchbox Scenario All (1)

Thumb
In this scenario matchbox will find duplicates in passed digital collection. All matchbox workflow steps are executed automatically in one turn. User will get a list of duplicates in result. Matchbox in this scenario is installed on remote Linux VM. Digital collection is stored on Windows machine.

Created: 2012-11-24 | Last updated: 2012-11-24

Credits: User Roman Network-member SCAPE

Uploader

Workflow AIT Matchbox Scenario Professional (3)

Thumb
In this scenario matchbox will find duplicates in passed digital collection. Each matchbox workflow step can be executed separately. User will get a list of duplicates in result. Matchbox in this scenario is installed on remote Linux VM. Digital collection is stored on Windows machine. This workflow starts duplicate finding process using the FindDuplicates python script of the matchbox tool. Matchbox tool support python in version 2.7. Execution starts from the directory where python scripts ...

Created: 2012-11-24 | Last updated: 2012-11-24

Credits: User Roman Network-member SCAPE

Uploader

Workflow AIT Matchbox Scenario Find Duplicates usin... (1)

Thumb
In this scenario matchbox will find duplicates in passed digital collection. All matchbox workflow steps are defined separately using input parameter sequence: clean, extract, train, bowhist and compare. User will get a list of duplicates in result. Matchbox in this scenario is installed on remote Linux VM. Digital collection is stored on Windows machine.

Created: 2012-11-24

Credits: User Roman Network-member SCAPE

Uploader

Workflow AIT Matchbox Scenario Check Duplicate Pair... (1)

Thumb
In this scenario matchbox will check duplicate pair of previously found duplicates in passed digital collection if output information was lost. The pair check does not require the time consumpting whole analysis and is very fast. Matchbox in this scenario is installed on remote Linux VM. Digital collection is stored on Windows machine.

Created: 2012-11-24

Credits: User Roman Network-member SCAPE

Uploader

Workflow Migration Imagemagick convert no compression (2)

Thumb
Converts an image using imagemagick convert -compress None

Created: 2013-02-25 | Last updated: 2013-02-26

Credits: User Kraxner User Markus Plangg

Attributions:

Workflow PhotoHawk - PAE (1)

Thumb
This workflow provides a comparison result for 2 raw images based on PhotoHawk tool (http://datascience.github.io/photohawk/). The result is measured using PAE metric (http://purl.org/DP/quality/measures#7).

Created: 2014-02-05

Credits: User Artur Kulmukhametov

Workflow PhotoHawk - MSE (1)

Thumb
This workflow provides a comparison result for 2 raw images based on PhotoHawk tool (http://datascience.github.io/photohawk/). The result is measured using MSE metric (http://purl.org/DP/quality/measures#6).

Created: 2014-02-05

Credits: User Artur Kulmukhametov

Workflow PhotoHawk - MAE (1)

Thumb
This workflow provides a comparison result for 2 raw images based on PhotoHawk tool (http://datascience.github.io/photohawk/). The result is measured using MAE metric (http://purl.org/DP/quality/measures#5).

Created: 2014-02-05

Credits: User Artur Kulmukhametov

Workflow PhotoHawk - AE (1)

Thumb
This workflow provides a comparison result for 2 raw images based on PhotoHawk tool (http://datascience.github.io/photohawk/). The result is measured using AE metric (http://purl.org/DP/quality/measures#4).

Created: 2014-02-05

Credits: User Artur Kulmukhametov

Workflow PhotoHawk - SSIM (1)

Thumb
This workflow provides a comparison result for 2 raw images based on PhotoHawk tool (http://datascience.github.io/photohawk/). The result is measured using SSIM metric (http://purl.org/DP/quality/measures#15).

Created: 2014-02-05

Credits: User Artur Kulmukhametov

Workflow Imagemagick identify - image size (1)

Thumb
Extracts the image size using imagemagick identify

Created: 2014-06-16

Credits: User Markus Plangg

Workflow entreztoKeggImage (1)

Thumb
This workflow accepts a list of Entrez Gene IDs. It dentifies which KEGG pathway each gene is involved with and displays the pathway diagrams

Created: 2014-09-05

Credits: User Katy Wolstencroft

Workflow Photohawk SSIM tiff/png/jpeg-jp2 (3)

Thumb
SCAPE QA Object Component. Compares tiff/png/jpeg to jp2 images using Photohawk SSIM.

Created: 2014-09-07 | Last updated: 2014-09-07

Credits: User Markus Plangg

Workflow Photohawk PAE tiff/png/jpeg (5)

Thumb
SCAPE QA Object Component. Compares tiff/png/jpeg images using Photohawk PAE.

Created: 2014-04-09 | Last updated: 2014-10-30

Workflow Photohawk MSE tiff/png/jpeg (3)

Thumb
SCAPE QA Object Component. Compares tiff/png/jpeg images using Photohawk MSE.

Created: 2014-04-09 | Last updated: 2014-10-30

Workflow Photohawk MAE tiff/png/jpeg (3)

Thumb
SCAPE QA Object Component. Compares tiff/png/jpeg images using Photohawk MAE.

Created: 2014-04-09 | Last updated: 2014-10-30

Workflow Photohawk equal tiff/png/jpeg (2)

Thumb
SCAPE QA Object Component. Compares tiff/png/jpeg images using Photohawk equal.

Created: 2014-04-09 | Last updated: 2014-09-07

Workflow Photohawk AE tiff/png/jpeg (3)

Thumb
SCAPE QA Object Component. Compares tiff/png/jpeg images using Photohawk AE.

Created: 2014-04-09 | Last updated: 2014-10-30

Workflow Photohawk MSE tiff/png/jpeg-jp2 (1)

Thumb
SCAPE QA Object Component. Compares tiff/png/jpeg to jp2 images using Photohawk MSE.

Created: 2014-09-07

Credits: User Markus Plangg

Workflow Photohawk AE tiff/png/jpeg-jp2 (1)

Thumb
SCAPE QA Object Component. Compares tiff/png/jpeg to jp2 images using Photohawk AE.

Created: 2014-09-07

Credits: User Markus Plangg

Workflow Photohawk MAE tiff/png/jpeg-jp2 (1)

Thumb
SCAPE QA Object Component. Compares tiff/png/jpeg to jp2 images using Photohawk MAE.

Created: 2014-09-07

Credits: User Markus Plangg

Workflow Photohawk PAE tiff/png/jpeg-jp2 (1)

Thumb
SCAPE QA Object Component. Compares tiff/png/jpeg to jp2 images using Photohawk PAE.

Created: 2014-09-07

Credits: User Markus Plangg

Workflow Photohawk SSIM tiff/png/jpeg (4)

Thumb
SCAPE QA Object Component. Compares tiff/png/jpeg images using Photohawk SSIM.

Created: 2014-04-01 | Last updated: 2014-10-30

Uploader

Workflow Texture classification: Knime Image Analytics (1)

Thumb
A workflow including image pre-processing and descriptor calculation for building a texture classification model. The workflow can really be used for any kind of image classification task for which has labelled training data.There is significant scope of improvement, both on the image processing , descriptor selection and model building phases..Happy image analytics !

Created: 2015-11-10

Credits: User Insilicoconsulting

Workflow Color auto balancing (1)

Thumb
Color auto balancing of RGB image

Created: 2017-05-02

Credits: User Christian S.

What is this?

Linked Data

Non-Information Resource URI: http://www.myexperiment.org/tags/737


Alternative Formats

HTML
RDF
XML