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Items tagged with "image" (47)

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Workflows (46)

Taverna 1 Original Uploader Alan Williams	Fetch Dragon images from BioMoby (v3) Created: 05/03/08 @ 14:09:35 \| Last updated: 14/07/10 @ 16:46:37 Credits: Tomoinn License: Creative Commons Attribution 3.0 Unported License Fetch images and annotations of snapdragons Rating: 0.0 / 5 (0 ratings) \| Versions: 3 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 305 times \| Downloaded: 108 times Tags (8): annotation \| bioinformatics \| biomoby \| example \| image \| mygrid \| snapdragon \| taverna	View Download (v3)
Taverna 1 Original Uploader Michael Gerlich	Search InChI in ChemSpider (v1) Created: 30/03/09 @ 09:24:33 \| Last updated: 30/03/09 @ 09:43:07 Credits: Michael Gerlich License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflows queries ChemSpider for compound information and compound images. Note that a Chemspider security token is needed in order to access some of the ChemSpider services (receive one by registering at ChemSpider). Possible search terms might be InChI codes, ChemSpider identifiers or names. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 51 times \| Downloaded: 24 times Tags (6): chemspider \| compound \| compound info + image \| image \| inchi \| list	View Download (v1)
Taverna 1 Original Uploader Michael Gerlich	Search InChI in NCBI eSearch (pccompound) (v1) Created: 30/03/09 @ 09:26:25 \| Last updated: 30/03/09 @ 09:47:00 Credits: Michael Gerlich License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow takes in a search term (e.g. InChI) for search in PubChem pccompound database. The result is an xml file containing summary information about the search term and also a compound image and the compound webpage fetched from Pubchem. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 93 times \| Downloaded: 47 times Tags (12): bioinformatics \| compound \| compound info + image \| database \| image \| inchi \| information \| ncbi \| pccompound \| pubchem \| search \| xml	View Download (v1)
Taverna 1 Original Uploader Michael Gerlich	MassBank to KEGG (v1) Created: 30/03/09 @ 09:30:32 \| Last updated: 30/03/09 @ 09:49:13 Credits: Michael Gerlich License: Creative Commons Attribution-Share Alike 3.0 Unported License Workflow that queries MassBank DB to retrieve database identifiers (KEGG, PubChem, InChI) and continue search with them to retrieve pathways from KEGG for given compound identifier,searches PubChem via eutils and PUG, queries ChemSpider for compound information and image. Note: Usage of ChemSpider web services requires a valid security token - receive one by registering at ChemSpider (look at your profile to see your token) Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 198 times \| Downloaded: 0 times Tags (21): bget \| bioinformatics \| chemspider \| compound \| compound info + image \| database \| eutils \| image \| inchi \| information \| mass spectrometry \| massbank \| metabolomics \| ncbi \| pathway \| pccompound \| pubchem \| pug \| search \| summary \| xml	View
Taverna 2 Original Uploader Stian Soiland-Reyes	Fetch today's xkcd comic (v1) Created: 03/07/09 @ 14:40:25 Credits: Stian Soiland-Reyes Attributions: Fetch today's xkcd comic License: Creative Commons Attribution-Share Alike 3.0 Unported License Use the local java plugins and some filtering operations to fetch the comic strip image from http://xkcd.com/ Based on the FetchDailyDilbert workflow. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 110 times \| Downloaded: 78 times Tags (4): fetch \| http \| image \| xkcd	View Download (v1)
Taverna 2 Original Uploader Peter Li	Calculating frequencies of gene expression levels using microarray data in MaxD (v1) Created: 15/03/10 @ 08:43:31 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow retrieves data from the MaxD microarray database and calculates the frequencies of gene expression levels using an R script Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 55 times \| Downloaded: 0 times Tags (9): beanshell \| database \| expression \| gene \| image \| maxd \| microarray \| r \| xpath	View
Taverna 2 Original Uploader Peter Li	Construction of skeleton SBML model using a list of yeast ORF numbers (v1) Created: 26/03/10 @ 17:08:13 \| Last updated: 26/03/10 @ 17:13:15 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow generates a skeleton SBML model consisting of the metabolic reactions for a given list of yeast enzymes ORF numbers Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 33 times \| Downloaded: 20 times Tags (7): graph \| image \| model \| ORF \| pathways \| sbml \| yeast	View Download (v1)
Taverna 2 Original Uploader Peter Li	Construction of skeleton SBML model using subsystem term (v1) Created: 26/03/10 @ 17:11:26 \| Last updated: 26/03/10 @ 17:12:06 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow generates a skeleton SBML model consisting of the metabolic reactions for a given subsystem term. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 49 times \| Downloaded: 24 times Tags (6): graph \| image \| model \| sbml \| systems_biology \| yeast	View Download (v1)
Taverna 2 Original Uploader Peter Li	Copasi time simulation of SBML model (v1) Created: 26/03/10 @ 17:23:25 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Uses the synchronous Copasi time simulation web service to predict the concentrations of species over a time period. The results from Copasi are provided in SBRML format which is visualised as a graph using an R script. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 79 times \| Downloaded: 37 times Tags (6): image \| model \| model_simulation \| sbml \| systems_biology \| user_interaction	View Download (v1)
Taverna 2 Original Uploader Peter Li	Get compound thumbnail (v1) Created: 13/07/10 @ 11:29:03 \| Last updated: 13/07/10 @ 11:29:04 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Returns a small image of the 2D structure of given chemical compound represented by its chemspider identifier Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 18 times \| Downloaded: 9 times Tags (3): cheminformatics \| chemspider \| image	View Download (v1)
Taverna 1 Original Uploader EdwardK...	Fetch Dragon images from BioMoby (v1) Created: 14/07/10 @ 16:20:46 \| Last updated: 14/07/10 @ 16:20:48 Credits: EdwardKawas Tomoinn Attributions: Fetch Dragon images from BioMoby License: Creative Commons Attribution-Share Alike 3.0 Unported License Fetch images and annotations of snapdragons Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 16 times \| Downloaded: 11 times Tags (8): annotation \| bioinformatics \| biomoby \| example \| image \| mygrid \| snapdragon \| taverna 1	View Download (v1)
Taverna 2 Original Uploader Xplanes	Segmentation (v2) Created: 12/01/11 @ 16:03:28 \| Last updated: 25/01/11 @ 16:41:27 Credits: Xplanes License: Creative Commons Attribution-Share Alike 3.0 Unported License Threshold input VTK image, apply gaussian blur and marching cubes. Taverna Plugin version: 0.2.2 GIMIAS Version: 1.3.0-win32 Temporary folder: C:\Data (you need to create it manually) Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 15 times \| Downloaded: 13 times Tags (4): gimias \| image \| medical imaging \| segmentation	View Download (v2)
Taverna 2 Original Uploader Jorgejesus	WPS orchestration example, image metadata extraction (v1) Created: 03/03/11 @ 09:26:24 \| Last updated: 03/03/11 @ 09:26:28 Credits: Jorgejesus License: Creative Commons Attribution-Share Alike 3.0 Unported License 1 image inputs (GeoTIFF, JPEG,PNG), metadata from gdalinfo and histogram analisys, histogram result is a PNG image in base64 coding (default WPS service encoding) that will be converted to binary. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 35 times \| Downloaded: 17 times Tags (9): gdal \| gdalinfo \| histogram \| image \| netmar \| orchestration \| services \| test \| wps	View Download (v1)
LONI Pipeline Original Uploader Pipeline	Automated Image Registration (v1) Created: 06/04/11 @ 00:35:21 \| Last updated: 06/04/11 @ 00:35:26 Credits: Pipeline License: Creative Commons Attribution-Share Alike 3.0 Unported License This is a simple registration workflow. The structural MRI images are aligned to a standard brain image by using AIR registration tools. To build this workflow follow the steps mentioned on the following pages. URL: http://www.loni.ucla.edu/Software/AIR Try this Pipeline Workflow Now! Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 11 times \| Downloaded: 7 times Tags (5): air \| automated \| image \| pipeline \| registration	View Download (v1)
LONI Pipeline Original Uploader Pipeline	Local Shape Analysis (LSA) Workflow (v1) Created: 06/04/11 @ 00:40:19 \| Last updated: 06/04/11 @ 00:40:26 Credits: Pipeline License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow takes raw un-skull-stripped volumes in 2 groups/populations and an ROI index to generate a color-coded shape object using the per-vertex local p-values of some local shape-measure (e.g., displacement, atrophy, Jacobian, curvature, etc). It also outputs the p-values color-map superimposed on the mean shape. Problem addressed by this workflow Identifying local group differences between 2 populations in one specific ROI. This workflow also generates mean-shape DX mo... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 10 times \| Downloaded: 4 times Tags (7): analysis \| brain \| brain imaging \| image \| local \| pipeline \| shape	View Download (v1)
LONI Pipeline Original Uploader Pipeline	BrainParser: Automated Volume Calculation of 56 ROIs (v1) Created: 06/04/11 @ 01:01:22 \| Last updated: 06/04/11 @ 01:01:27 Credits: Pipeline License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow takes raw un-skull-stripped volumes and generates tables of the volumes for all 56 ROIs currently automatically extracted using LONI BrainParser. Problem addressed by this workflow Computing and tabulating the Brain Volumes of 56 cortical and sub-cortical ROIs. This workflow also generates DX models of all 56 ROIs which can be viewed as a scene in ShapeViewer. Detailed Workflow Usage & Specifications Input: Any volumetric file format can be use... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 9 times \| Downloaded: 4 times Tags (5): brain mapping \| brainparser \| image \| pipeline \| regions of interest	View Download (v1)
LONI Pipeline Original Uploader Pipeline	Image Registration Meta Algorithm (IRMA) (v1) Created: 06/04/11 @ 01:39:08 \| Last updated: 14/07/11 @ 01:09:06 Credits: Pipeline License: Creative Commons Attribution-Share Alike 3.0 Unported License Overview - Workflow-Title In this workflow different registration algorithms are applied to the same image and the image that is best registered to the template is chosen as the output top candidate. Problem addressed by this workflow In this workflow various registration algorithm is performed on the same subject. The algorithm that gives the best result is chosen. This might be different for different input images. This workflow is robust and picks the best-registered imag... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 9 times \| Downloaded: 4 times Tags (5): brain \| image \| meta-algorithm \| pipeline \| registration	View Download (v1)
Taverna 2 Original Uploader cory (Kazuki Oshita)	CGR from multiple fasta files (v1) Created: 29/04/11 @ 15:26:53 \| Last updated: 29/04/11 @ 15:33:03 Credits: cory (Kazuki Oshita) License: GNU General Public License (GPL) 2.0 The workflow generates Chaos Game Represenations (CGR) image from multiple fasta files. See http://www.g-language.org/wiki/cgr for more information about the Chaos Game Representations. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 19 times \| Downloaded: 10 times Tags (3): cgr \| g-language \| image	View Download (v1)
Taverna 2 Original Uploader Roman	Extract histogram features from image file (v1) Created: 16/06/11 @ 17:09:20 \| Last updated: 04/04/12 @ 08:01:37 Credits: Roman License: Creative Commons Attribution-Share Alike 3.0 Unported License As a template for creation of image workflows was used xa-toolwrapper project from Sven Schlarb (https://github.com/openplanets/scape/tree/master/xa-toolwrapper). This project enables creation of WSDL web service that wraps command line tool like ‘extractFeatures’ or ‘create’. The workflow for ‘extractFeatures’ tool has two input parameters. The URL to the input image file and the number of histogram bins as integer. This workflow extracts histogram feature... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 24 times \| Downloaded: 5 times Tags (6): characterisation \| command line tool \| image \| image processing \| quality assurance \| scape	View Download (v1)
Taverna 2 Original Uploader Roman	Compare histogram features of image files (v1) Created: 16/06/11 @ 17:22:04 \| Last updated: 04/04/12 @ 08:00:53 Credits: Roman License: Creative Commons Attribution-Share Alike 3.0 Unported License As a template for creation of image workflows was used xa-toolwrapper project from Sven Schlarb (https://github.com/openplanets/scape/tree/master/xa-toolwrapper). This project enables creation of WSDL web service that wraps command line tool like ‘extractFeatures’ or ‘create’. The workflow for ‘compare’ tool has three input parameters. These are two URLs to the XML histogram files that comprise information about image features. These files are acquired us... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 27 times \| Downloaded: 7 times Tags (6): command line tool \| comparison \| image \| image processing \| quality assurance \| scape	View Download (v1)
Taverna 2 Original Uploader Roman	Extract histogram features from image file using RESTful interface (v1) Created: 01/07/11 @ 13:15:37 \| Last updated: 04/04/12 @ 08:00:05 Credits: Roman License: Creative Commons Attribution-Share Alike 3.0 Unported License The main element of this workflow is a RESTful service designed in the SCAPE QA command line tools RESTful package https://github.com/openplanets/scape/tree/master/pc-qa-toolwrapper-rest. The Github project https://github.com/openplanets/scape/tree/master/xa-rester from Andy Jackson is a basis implementation for pc-qa-toolwrapper-rest package. The QA REST package enables creation of RESTful web service that wraps QA command line tool like ‘extractfeatures’ or ‘create’... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 20 times \| Downloaded: 7 times Tags (6): command line tool \| image \| image processing \| quality assurance \| restful service \| scape	View Download (v1)
Taverna 2 Original Uploader Roman	Common SCAPE QA command line tool RESTful service (v1) Created: 01/07/11 @ 13:48:30 \| Last updated: 04/04/12 @ 07:59:17 Credits: Roman License: Creative Commons Attribution-Share Alike 3.0 Unported License The QA REST package enables creation of RESTful web service that wraps any QA command line tools. The main element of this workflow is a RESTful service designed in the SCAPE QA command line tools RESTful package https://github.com/openplanets/scape/tree/master/pc-qa-toolwrapper-rest. The Github project https://github.com/openplanets/scape/tree/master/xa-rester from Andy Jackson is a basis implementation for pc-qa-toolwrapper-rest package. The workflow comprises path to the RESTful servi... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 19 times \| Downloaded: 7 times Tags (6): command line tool \| image \| image processing \| quality assurance \| restful service \| scape	View Download (v1)
Taverna 2 Original Uploader Harvey	Image metadata extraction (v1) Created: 31/08/11 @ 12:02:29 \| Last updated: 31/08/11 @ 12:02:31 Credits: Harvey License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow invokes the gdalinfo service and will list various information about a GDAL supported raster dataset of the image ( GeoTIFF, PNG, JPEG and GIF.). Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 50 times \| Downloaded: 3 times Tags (7): gdalinfo \| genesi \| image \| metadata \| pywps \| workflow \| wps	View Download (v1)
Taverna 2 Original Uploader Harvey	TIFF to PNG (v1) Created: 31/08/11 @ 12:04:44 \| Last updated: 31/08/11 @ 12:04:47 Credits: Harvey License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow can convert Image format from TIFF to PNG. This workflow is one of the example for GENESI-DEC ontology. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 32 times \| Downloaded: 9 times Tags (8): convert \| genesi \| geotiff \| image \| pywps \| tif2png \| workflow \| wps	View Download (v1)
Taverna 2 Original Uploader Gstalloch	Fetch today'sVG Cats comic (v1) Created: 14/09/11 @ 04:32:48 \| Last updated: 14/09/11 @ 05:01:30 Credits: Gstalloch Tomoinn Stian Soiland-Reyes Alan Williams Attributions: Fetch today's xkcd comic License: Creative Commons Attribution-Share Alike 3.0 Unported License Use the local java plugins and some filtering operations to fetch the comic strip image from http://xkcd.com/ Based on the FetchDailyDilbert workflow. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 3 times \| Downloaded: 4 times Tags (3): comic \| fetch \| image	View Download (v1)
Taverna 2 Original Uploader Atminer	Fetch today's cat and girl comic (v1) Created: 14/09/11 @ 04:38:01 \| Last updated: 14/09/11 @ 04:39:29 Credits: Atminer Attributions: Fetch today's xkcd comic License: Creative Commons Attribution-Share Alike 3.0 Unported License Use the local java plugins and some filtering operations to fetch the comic strip image from http://catandgirl.com/, your major source of essential lead. Based on the Fetch today's xkcd workflow. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 7 times \| Downloaded: 3 times Tags (4): comic \| comics \| image \| ist600	View Download (v1)
Taverna 2 Original Uploader Jorgejesus	Geottif image reprojection (v1) Created: 16/09/11 @ 17:32:25 \| Last updated: 16/09/11 @ 17:32:29 Credits: Jorgejesus License: Creative Commons Attribution-Share Alike 3.0 Unported License Example of a WPS service that reprojects a geoTIFF by using a EPSG code. THe example image is in EPSG:32119, lcc projection for north caroline and it comes from GRASS-GIS spearfish dataset. The image is reprojected into EPSG:4326 (lat/long): Metadata: http://rsg.pml.ac.uk/wps/generic.cgi?request=describeProcess&service=wps&identifier=reprojectImage&version=1.0.0 Library: gdalwarp Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 18 times \| Downloaded: 3 times Tags (6): example \| gdalwarp \| image \| projection \| transformation \| wps	View Download (v1)
Kepler Original Uploader Gstalloch	Convert a URL to an image - IST 600 (v1) Created: 28/09/11 @ 07:26:22 \| Last updated: 28/09/11 @ 07:26:26 Credits: Gstalloch License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow converts the Lackadaisy Cats comic to an image in Kepler. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 8 times \| Downloaded: 10 times Tags (7): comic \| image \| ist 600 \| kepler \| lackadaisy cats \| url \| workflow	View Download (v1)
Kepler Original Uploader Atminer	Fetch a cat and girl comic (v1) Created: 28/09/11 @ 13:59:53 \| Last updated: 28/09/11 @ 14:00:52 Credits: Atminer License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow retrieves the cat and girl comic whose name is specified in the URL constant. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 5 times \| Downloaded: 7 times Tags (4): comic \| comics \| image \| ist600	View Download (v1)
Taverna 2 Original Uploader Jorgejesus	r.stats workflow for pixel statistics (v1) Created: 02/11/11 @ 09:58:42 \| Last updated: 02/11/11 @ 10:00:42 Credits: Jorgejesus License: Creative Commons Attribution-Share Alike 3.0 Unported License r.stats operation for image. Output will group pixels by: DN, total area, relative %. This worflow is used inside the ice Class exampel as a nested workflow Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 11 times \| Downloaded: 6 times Tags (7): grass \| image \| nercs \| netmar \| pywps \| r.stats \| statistics	View Download (v1)
OCR and text edit distance Original Uploader perdalum	Calculate edit distance based on words (v1) Created: 14/11/11 @ 15:12:18 \| Last updated: 14/11/11 @ 15:13:26 Credits: perdalum License: Creative Commons Attribution-Share Alike 3.0 Unported License Calculate the word based edit distance between a scan of an OCR image and its ground truth. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 21 times \| Downloaded: 8 times Tags (1): image	View Download (v1)
Taverna 2 Original Uploader Roman	Image files comparison using histograms and profiles V1.0 (v2) Created: 22/11/11 @ 12:29:08 \| Last updated: 23/11/11 @ 13:47:20 Credits: Roman License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow extracts histogram and profile features from image file applying image processing command line tool. Necessary configuration files are stored on Github (https://github.com/openplanets/scape/tree/master/pc-qa-toolwrapper). As a template for creation of image workflows was used xa-toolwrapper project from Sven Schlarb (https://github.com/openplanets/scape/tree/master/xa-toolwrapper). This workflow provides WSDL web service that wraps command line tool with tho options ‘extra... Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 20 times \| Downloaded: 4 times Tags (8): command line tool \| features \| file comparison \| image \| image processing \| quality assurance \| scape \| tools	View Download (v2)
Taverna 2 Original Uploader Katy Wolstencroft	NCBI Gi to Kegg Pathway Images (v2) Created: 12/01/12 @ 09:38:10 \| Last updated: 12/01/12 @ 15:04:00 Credits: Katy Wolstencroft Paul Fisher Attributions: NCBI Gi to Kegg Pathways License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow accepts a list of genbank gene identifiers and returns descriptions of gene functions and a list of all pathways each gene is involved in, according to the KEGG database. Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 9 times \| Downloaded: 12 times Tags (6): genbank \| genes \| gi \| image \| ncbi \| pathways	View Download (v2)
Taverna 2 Original Uploader Markus Plangg	dcraw (sRGB, ColorInterpolated, FixedWhitebalance) (v2) Created: 08/12/11 @ 18:57:06 \| Last updated: 16/12/11 @ 17:54:02 License: Creative Commons Attribution-Share Alike 3.0 Unported License Reads a RAW image with these parameters using dcraw and returns the image data as byte array. Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 8 times \| Downloaded: 8 times Tags (5): dcraw \| image \| java image evaluator \| raw \| rawverna	View Download (v2)
Taverna 2 Original Uploader Markus Plangg	dcraw (sRGB, ColorInterpolated, FixedWhitelevel) (v2) Created: 08/12/11 @ 18:55:19 \| Last updated: 16/12/11 @ 17:53:02 License: Creative Commons Attribution-Share Alike 3.0 Unported License Reads a RAW image with these parameters using dcraw and returns the image data as byte array. Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 7 times \| Downloaded: 8 times Tags (5): dcraw \| image \| java image evaluator \| raw \| rawverna	View Download (v2)
Taverna 2 Original Uploader Markus Plangg	dcraw (NoConversion, NoInterpretation, FixedWhitelevel) (v4) Created: 08/12/11 @ 18:22:28 \| Last updated: 16/12/11 @ 17:52:34 License: Creative Commons Attribution-Share Alike 3.0 Unported License Reads a RAW image with these parameters using dcraw and returns the image data as byte array. Rating: 0.0 / 5 (0 ratings) \| Versions: 4 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 2 times \| Downloaded: 2 times Tags (5): dcraw \| image \| java image evaluator \| raw \| rawverna	View Download (v4)
Taverna 2 Original Uploader Markus Plangg	Convert by target path (v1) Created: 21/02/12 @ 17:21:20 \| Last updated: 21/02/12 @ 17:21:21 Credits: Markus Plangg License: Creative Commons Attribution-Share Alike 3.0 Unported License Converts a file to a target format depending on the target path extension. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 1 time \| Downloaded: 3 times Tags (2): convert \| image	View Download (v1)
Taverna 2 Original Uploader Markus Plangg	Get image mimetype (v1) Created: 21/02/12 @ 17:24:40 \| Last updated: 21/02/12 @ 17:24:41 Credits: Markus Plangg License: Creative Commons Attribution-Share Alike 3.0 Unported License Returns the mimetype of an image. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 2 times \| Downloaded: 3 times Tags (6): dfs \| fits \| image \| list \| rawverna \| tools	View Download (v1)
Taverna 2 Original Uploader Markus Plangg	RAWverna Image evaluation - Read image (RAW, NonRAW) (v1) Created: 21/02/12 @ 17:33:10 \| Last updated: 21/02/12 @ 17:33:11 Credits: Markus Plangg License: Creative Commons Attribution-Share Alike 3.0 Unported License Reads an image for evaluation by RAWverna. The read parameters depend on the type of this image and the image for comparison. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 2 times \| Downloaded: 2 times Tags (7): beanshell \| dcraw \| dfs \| image \| java image evaluator \| raw \| rawverna	View Download (v1)
Taverna 2 Original Uploader Markus Plangg	RAWverna Image evaluation - Read images (RAW, NonRAW) (v1) Created: 21/02/12 @ 17:37:37 \| Last updated: 21/02/12 @ 17:37:38 Credits: Markus Plangg License: Creative Commons Attribution-Share Alike 3.0 Unported License Reads images for evaluation by RAWverna. The read parameters depend on the type of the images. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 1 time \| Downloaded: 3 times Tags (7): beanshell \| dcraw \| dfs \| image \| java image evaluator \| raw \| rawverna	View Download (v1)
Taverna 2 Original Uploader Markus Plangg	RAWverna Image evaluation - Read Image (RAW) (v1) Created: 21/02/12 @ 17:39:52 \| Last updated: 21/02/12 @ 17:39:53 Credits: Markus Plangg License: Creative Commons Attribution-Share Alike 3.0 Unported License Reads an image from the given path using dcraw for image comparison. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 1 time \| Downloaded: 3 times Tags (5): beanshell \| dcraw \| image \| raw \| rawverna	View Download (v1)
Taverna 2 Original Uploader Markus Plangg	RAWverna image evaluation - Read images (RAW) (v1) Created: 21/02/12 @ 17:40:54 Credits: Markus Plangg License: Creative Commons Attribution-Share Alike 3.0 Unported License Reads RAW images for evaluation by RAWverna. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 1 time \| Downloaded: 3 times Tags (5): beanshell \| dcraw \| image \| raw \| rawverna	View Download (v1)
Taverna 2 Original Uploader Markus Plangg	RAWverna Image Evaluator - Evaluate Equals (v1) Created: 21/02/12 @ 17:46:15 \| Last updated: 21/02/12 @ 17:46:16 Credits: Markus Plangg License: Creative Commons Attribution-Share Alike 3.0 Unported License Takes two images as byte array and compares them for equality using the RAWverna Image Evaluator. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 2 times \| Downloaded: 4 times Tags (5): comparison \| image \| java image evaluator \| raw \| rawverna	View Download (v1)
Taverna 2 Original Uploader Markus Plangg	RAWverna Image Evaluator - Evaluate others (v1) Created: 21/02/12 @ 17:46:55 \| Last updated: 21/02/12 @ 17:46:56 Credits: Markus Plangg License: Creative Commons Attribution-Share Alike 3.0 Unported License Takes two images as byte array and compares them using the RAWverna Image Evaluator. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 1 time \| Downloaded: 4 times Tags (5): comparison \| image \| java image evaluator \| raw \| rawverna	View Download (v1)
Taverna 2 Original Uploader Markus Plangg	RAWverna Image Evaluator - Evaluate relative (v1) Created: 21/02/12 @ 17:47:34 \| Last updated: 21/02/12 @ 17:47:35 Credits: Markus Plangg License: Creative Commons Attribution-Share Alike 3.0 Unported License Takes two images as byte array and compares them using the RAWverna Image Evaluator. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 1 time \| Downloaded: 4 times Tags (5): comparison \| image \| java image evaluator \| raw \| rawverna	View Download (v1)
Taverna 2 Original Uploader Markus Plangg	RAWverna Image Evaluator - Evaluate ssim (v1) Created: 21/02/12 @ 17:48:23 \| Last updated: 21/02/12 @ 17:48:24 Credits: Markus Plangg License: Creative Commons Attribution-Share Alike 3.0 Unported License Takes two images as byte array and compares them using the RAWverna Image Evaluator. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 1 time \| Downloaded: 4 times Tags (5): comparison \| image \| java image evaluator \| raw \| rawverna	View Download (v1)

Files (1)

Uploader:

Dr. Sven Van Poucke

Wound Image Data Mining

Created: 17/04/11 @ 14:00:45 | Last updated: 04/05/11 @ 12:35:28

Credits: Dr. Sven Van Poucke

Attributions: Wound Image Data Mining Wound Image Data Mining

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The aim of research behind this file is to discover the way our previously published color-calibration algorithm influences de detection and description of salient points. A recent paper can be found at: http://www.biomedcentral.com/1471-2342/10/7. Other work: Automatic Colorimetric Calibration of Chronic Wound Imaging. S. Van Poucke, Y. Vander Haeghen, K. Vissers, T. Meert, P. G. Jorens BMC Med Imaging. 2010 Mar 18;10:7 Comparative analysis of two methods for wound bed area measur...

File type: Trident (Package)

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