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Items tagged with "bioextract" (5)
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Created: 13/01/10 @ 18:42:35 | Last updated: 17/11/10 @ 13:46:04
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
This workflow retrieves Liliopsida chloroplast petb gene sequences from NCBI Nucleotide, removes duplicate sequences and saves the results at BioExtract Server. These results are then converted into GenBank format and fed into Fetch Translation, which removes the translation from the CDS coding region. Translations are then used to build a multiple alignment using ClustalW.
Rating: 4.0 / 5 (1 rating) | Versions: 6 | Reviews: 0 | Comments: 3 | Citations: 1 Viewed: 544 times | Downloaded: 106 times Tags (5): |
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Created: 13/01/10 @ 18:47:06 | Last updated: 17/11/10 @ 13:57:19
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
Bootstrapped sequences algorithm reads in a data set, and produces multiple data sets from it by bootstrap resampling. http://pro.genomics.purdue.edu/cgi-bin/emboss/help/fseqboot
Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 204 times | Downloaded: 130 times Tags (5): |
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Created: 22/07/10 @ 20:20:07 | Last updated: 22/07/10 @ 20:29:56
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
This workflow, created using the BioExtract Server, contains a protein query (using the NCBI Protein Database), Blastp, ClustalW, Transeq, Garnier, PepWindowWall, PepInfo, and Octanol. For this workflow, a mutated protein sequence needs to be selected. Once the corresponding non-mutated sequence has been queried, the Blastp tool can be used to find sequences similar to the one queried, and the ClustalW tool can be used to analyze whether the mutation is conserved within species. The Tra...
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 1 Viewed: 45 times | Downloaded: 21 times Tags (3): |
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Created: 07/08/09 @ 16:04:23 | Last updated: 07/08/09 @ 16:23:53
A tutorial to demonstrate how to create a workflow within the BioExtract Server at bioextract.org. Specifically, it shows how to perform a phylogenetic analysis on a set of proteins where the starting point is a query for specific nucleotide gene sequences.
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Created: 07/08/09 @ 16:20:06 | Last updated: 07/08/09 @ 16:25:46
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
This tutorial demonstrates how to create a workflow within the BioExtract Server at bioextract.org. Specifically, it shows how to perform a phylogenetic analysis on a set of proteins where the starting point is a query for specific nucleotide gene sequences.
File type: Word 2007 document Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 29 times | Downloaded: 25 times Tags: |
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