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Items tagged with "emma" (2)

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Workflows (2)

BioExtract Server

Original Uploader

Carol Lushbough

Multiple Protein Alignment Profiling(1) (v4)

Created: 13/01/10 @ 18:52:45 | Last updated: 17/11/10 @ 14:13:20

Credits: Carol Lushbough Alan Williams

Attributions: A workflow version of the EMBOSS tutorial

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Designed from an example workflow at Traverna, this workflow retrieves a set of sequences from UniProt, then simultaneously scans for transmembrane regions and performs a multiple alignment using EMMA. The alignment is then plotted to a set of PNG images, followed by a profile analysis using prophecy and prophet tools.

Rating: 0.0 / 5 (0 ratings) | Versions: 4 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 149 times | Downloaded: 58 times

Tags (7):

alignment
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ebi
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emma
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genomics
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prettyplot
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profile
|
tmap

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Download (v4)

Taverna 2

Original Uploader

Katy Wolstencroft

BiomartAndEMBOSSAnalysis (v4)

Created: 27/01/11 @ 17:03:03 | Last updated: 12/05/11 @ 13:31:41

Credits: Katy Wolstencroft Alan Williams

Attributions: BiomartAndEMBOSSAnalysis

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This workflow retrieves all genes on human chromosome 22 that are associated with a disease and aligns the upstream regions with mouse and rat homologues. The alignments are plotted and corresponding sequence ids are also returned.Using Biomart and EMBOSS soaplab services, This workflow retrieves a number of sequences from 3 species: mouse, human, rat; align them, and returns a plot of the alignment result. Corresponding sequence ids are also returned.

Rating: 0.0 / 5 (0 ratings) | Versions: 4 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 97 times | Downloaded: 55 times

Tags (16):