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Items tagged with "looping" (10)

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Workflows (10)

Taverna 2 Original Uploader Stian Soiland-Reyes	EBI_InterProScan for Taverna 2 (v2) Created: 26/01/10 @ 14:46:07 \| Last updated: 26/01/10 @ 14:46:08 Credits: Stian Soiland-Reyes Paolo Katy Wolstencroft Hamish McWilliam Attributions: EBI InterproScan T2 EBI_InterProScan License: Creative Commons Attribution-Share Alike 3.0 Unported License Perform an InterProScan analysis of a protein sequence using the EBI’s WSInterProScan service (see http://www.ebi.ac.uk/Tools/webservices/services/interproscan). The input sequence to use and the user e-mail address are inputs, the other parameters for the analysis (see Job_params) are allowed to default. InterProScan searches a protein sequence against the protein family and domain signature databases integrated into InterPro (see http://www.ebi.ac.uk/interpro/). A set of matches to the sig... Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 162 times \| Downloaded: 118 times Tags (5): interpro \| interproscan \| looping \| sequence \| term	View Download (v2)
Taverna 2 Original Uploader Stian Soiland-Reyes	EBI_InterProScan for Taverna 2 (v2) Created: 26/01/10 @ 14:45:46 \| Last updated: 24/11/10 @ 10:04:09 Credits: Stian Soiland-Reyes Katy Wolstencroft Paolo Hamish McWilliam Attributions: EBI_InterProScan for Taverna 2 EBI InterproScan T2 EBI_InterProScan EBI InterProScan License: Creative Commons Attribution-Share Alike 3.0 Unported License Perform an InterProScan analysis of a protein sequence using the EBI’s WSInterProScan service (see http://www.ebi.ac.uk/Tools/webservices/services/interproscan). The input sequence to use and the user e-mail address are inputs, the other parameters for the analysis (see Job_params) are allowed to default. InterProScan searches a protein sequence against the protein family and domain signature databases integrated into InterPro (see http://www.ebi.ac.uk/interpro/). A set of matches to t... Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 373 times \| Downloaded: 190 times Tags (6): interpro \| interproscan \| looping \| sequence \| term	View Download (v2)
Taverna 2 Original Uploader George	Multiple Choice Quiz (v1) Created: 16/11/09 @ 18:10:54 Credits: George License: Creative Commons Attribution-Share Alike 3.0 Unported License A multiple choice quiz constructed using the select webservice, control links and looping strategy. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 52 times \| Downloaded: 22 times Tags (2): looping \| select	View Download (v1)
Taverna 2 Original Uploader Stian Soiland-Reyes	Dummy example of looping (v2) Created: 27/01/10 @ 15:52:50 \| Last updated: 27/01/10 @ 15:56:10 Credits: Stian Soiland-Reyes License: Creative Commons Attribution 3.0 Unported License Example of looping over asynchronous services. The dummy beanshell scripts represents the operations of an asynchronous submit-status-results style service, such as EBI's InterProScan and NCBI Blast. createJob creates a temporary file with the content "0". Filename retuirned as a "job ID". checkStatus reads the job, and return state "RUNNING" as long as the content is less than 10, increasing the number for each call. ... Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 130 times \| Downloaded: 62 times Tags (6): beanshell \| condition \| dummy \| example \| loop \| looping	View Download (v2)
Taverna 2 Original Uploader Katy Wolstencroft	EBI_NCBI_BLAST (v1) Created: 17/01/11 @ 12:51:58 \| Last updated: 17/01/11 @ 12:52:03 Credits: Katy Wolstencroft Hamish McWilliam Attributions: EBI_NCBI_BLAST License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow performs an NCBI blast at the EBI. It uses the new EBI services, which are asynchronous and require looping over the nested workflow (Status) until the workflow has finished. Many of the EBI services now work in this way, so you can use this workflow as an example of the invocation pattern and looping configuration. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 61 times \| Downloaded: 28 times Tags (13): async \| asynchronous services \| BLAST \| blastp \| database \| ebi \| example \| looping \| ncbi \| ncbi blast \| protein sequence \| sequence \| uniprot	View Download (v1)
Taverna 2 Original Uploader Katy Wolstencroft	EBI_InterproScan_NewServices (v2) Created: 17/01/11 @ 16:08:48 \| Last updated: 17/01/11 @ 16:12:40 Credits: Katy Wolstencroft Hamish McWilliam Stian Soiland-Reyes Attributions: EBI_InterProScan for Taverna 2 EBI_InterProScan for Taverna 2 EBI_InterProScan License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow performs an interproscan on provided sequencesThis workflow performs an interproscan at the EBI on sequences provided as input. The output is provided as text, xml or png. This workflow uses the new EBI services, which are asynchronous and require looping over the nested workflow (Status) until the workflow has finished. Many of the EBI services now work in this way, so you can use this workflow as an example of the invocation pattern and looping configuration. Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 56 times \| Downloaded: 38 times Tags (11): async \| asynchronous services \| ebi \| example \| interpro \| interproscan \| looping \| protein domain \| protein family \| protein motif \| protein sequence	View Download (v2)
Taverna 2 Original Uploader Katy Wolstencroft	EMBL-EBI ClustalW2_SOAP (v1) Created: 17/01/11 @ 16:48:40 \| Last updated: 17/01/11 @ 16:48:37 Credits: Katy Wolstencroft Hamish McWilliam Attributions: EMBL-EBI ClustalW2 (SOAP) EBI_ClustalW2 License: Creative Commons Attribution-Share Alike 3.0 Unported License Perform a ClustalW2 alignment using the EMBL-EBI’s ClustalW2 (SOAP) service (see http://www.ebi.ac.uk/Tools/webservices/services/msa/clustalw2_soap). This workflow uses the new EBI services, which are asynchronous and require looping over the nested workflow (Status) until the workflow has finished. Many of the EBI services now work in this way, so you can use this workflow as an example of the invocation pattern and looping configuration. Perform a ClustalW2 alignment using the EMBL-EBI’s C... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 21 times \| Downloaded: 12 times Tags (9): alignment \| async \| asynchronous services \| clustalw \| DNA \| ebi \| looping \| multiple sequence alignment \| protein	View Download (v1)
Taverna 2 Original Uploader Alan Williams	EBI_InterproScan_NewServices (v1) Created: 12/07/11 @ 13:02:49 \| Last updated: 12/07/11 @ 13:02:50 Credits: Alan Williams Katy Wolstencroft Attributions: EBI_InterproScan_NewServices License: Creative Commons Attribution 3.0 Unported License This workflow performs an interproscan at the EBI on sequences provided as input. The output is provided as text, xml or png. This workflow uses the new EBI services, which are asynchronous and require looping over the nested workflow (Status) until the workflow has finished. Many of the EBI services now work in this way, so you can use this workflow as an example of the invocation pattern and looping configuration. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 7 times \| Downloaded: 4 times Tags (3): example \| looping \| taverna	View Download (v1)
Taverna 2 Original Uploader Alan Williams	Multiple choice quiz (v1) Created: 12/07/11 @ 13:46:40 \| Last updated: 12/07/11 @ 13:46:42 Credits: Alan Williams George Attributions: Multiple choice quiz License: Creative Commons Attribution 3.0 Unported License A fun example workflow showing user-interaction and service looping Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 8 times \| Downloaded: 8 times Tags (4): example \| looping \| quiz \| taverna	View Download (v1)
Taverna 2 Original Uploader Alan Williams	Example of explicit looping (v1) Created: 15/11/11 @ 10:45:45 \| Last updated: 15/11/11 @ 10:45:47 Credits: Alan Williams License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow demonstrates how a nested workflow can be called an explicit number of times. Note that the loop iterator does not need to be used in the logic of the loop contents. It can be used as a sentinel (see the conditional workflow) Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 14 times \| Downloaded: 14 times Tags (2): example \| looping	View Download (v1)