Tag Results

Items tagged with "discovery" (8)

Note: some items may not be visible to you, due to viewing permissions.


Groups (1)

Network-member GenOUEST Platform

Unique name: genouest
Created: Monday 08 June 2009 09:38:23 (UTC)

Group reserved to the genouest platform team or the trusted users of the platform.   The bioinformatics platform provides, beside basic command-line and web form tools, web services access.Those web services can be triggered by 2 ways: wsdl using  command-line like program call : list of available services is available at http://webservices.genouest.org/opal2/GetServicesList.do mo...

5 shared items   |   0 announcements

Members (2):

Tags:

Packs (1)
Creator

Pack Concept profile analysis using Anni Web services


Created: 2013-02-06 19:11:26 | Last updated: 2014-07-15 08:17:33

Concept profile analysis is a knowledge discovery method that proved successful in generating hypotheses about molecular mechanisms explaining the results from genotype-phenotype studies. This technology has been implemented in the Anni standalone application (http://biosemantics.org/anni). This pack contains a number of workflows that can be used together to configure and run typical user pipelines from Anni through the Anni Web services (http://www.biocatalogue.org/services/3559).

11 items in this pack

Comments: 0 | Viewed: 93 times | Downloaded: 14 times

Tags:

Workflows (6)

Workflow Match concept profiles (6)

Thumb
Purpose of workflow: The workflow can be used to match a set of concept profiles with another set of concept profiles. Result: A list of concepts ordered by their match to the query concept profiles.

Created: 2011-12-02 | Last updated: 2014-07-14

Credits: User Marco Roos User Kristina Hettne User Martijn Schuemie User Reinout van Schouwen

Workflow SNPs to Concept Set through Concept Profil... (6)

Thumb
Purpose: Currently, this workflow takes one SNP and a concept set as input, calculates the matching score between these, finds co-occuring documents between the query concept and the match concept, finds the concept that contributes the most to the match, and the documents that support this finding. Author comments: The workflow is in Beta stage. It runs, but needs more testing with different parameter settings. This workflow can be used together with other workflows in this pack: http://www...

Created: 2012-06-26 | Last updated: 2013-02-05

Credits: User Kristina Hettne User Eleni User Harish Dharuri User Reinout van Schouwen User Marco Roos User Martijn Schuemie Network-member BioSemantics

Attributions: Workflow Find Supporting Documents Workflow SNP_ID2EntrezGene_ID Workflow DatabaseID to ConceptID Workflow Match gene lists based on information in literature Workflow Match concept profiles Workflow Explain concept scores

Workflow Match concept profiles with predefined set (2)

Thumb
Purpose of workflow: The workflow can be used to match a set of concept profiles with predefined set of concept profiles. Result: A list of concepts ordered by their match to the query concept profiles.

Created: 2013-02-05 | Last updated: 2014-07-14

Credits: User Kristina Hettne User Marco Roos User Reinout van Schouwen Network-member BioSemantics

Workflow Annotate a gene list with disease concepts (1)

Thumb
Purpose: Currently, this workflow takes a list of genes and a concept set as input, calculates the matching score between these and finds the concept that contributes the most to the match. Author comments: The workflow is in Beta stage. It runs, but needs more testing with different parameter settings. This workflow can be used together with other workflows in this pack: http://www.myexperiment.org/packs/368 for functional gene annotation and knowledge discovery.

Created: 2013-02-06

Credits: User Kristina Hettne User Reinout van Schouwen User Marco Roos Network-member BioSemantics

Attributions: Workflow SNPs to Concept Set through Concept Profile Matching v2

Uploader

Workflow Variant discovery and reference correction... (1)

Error identification and error correction of reference genome assembly from deep-seq Illumina reads.

Created: 2013-05-14 | Last updated: 2013-05-14

Credits: User Robsyme

Workflow Prioritize gene list for the Cure game (1)

Thumb
This workflow prioritizes a gene list according to its association with the 'concept_id'. Here we are prioritizing a gene list against breast cancer, in order to try to beat Barney in the game The Cure (http://genegames.org/cure/). Note: Before running this workflow the gene names supplied in the game first needs to be mapped to Entrez gene identifiers. This can be done using either this workflow http://www.myexperiment.org/workflows/3722 or a by performing a search in the NCBI Entrez gene d...

Created: 2015-04-29

Credits: User Kristina Hettne User Eleni

Attributions: Workflow Prioritize gene list

What is this?

Linked Data

Non-Information Resource URI: http://www.myexperiment.org/tags/1296


Alternative Formats

HTML
RDF
XML