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Items tagged with "enzyme" (6)

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Files (2)
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Blob Ondex Workflows

Created: 2011-09-01 17:17:57 | Last updated: 2011-09-01 17:18:05

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This zip file contains a large number of Taverna 2 workflows that utilise the Ondex Web Service, for manipulating Ondex graphs.

File type: ZIP archive

Comments: 0 | Viewed: 31 times | Downloaded: 0 times

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Uploader

Blob Pathway example for Selenzyme

Created: 2017-08-18 08:35:57 | Last updated: 2017-08-23 11:13:20

Credits: User Pablo Carbonell

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Example of an input file containing information about a metabolic pathway to query the KNIME workflow for Selenzyme, an enzyme selection tool for pathway design.The file contains a list of reactions or generic reactions expressed in SMILES or SMARTS (SMIRKS) format. In the example, the list of reactions correspond to the different steps of a biosynthetic pathway.

File type: text/csv

Comments: 0 | Viewed: 6 times | Downloaded: 2 times

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Packs (1)
Creator

Pack Selenzyme


Created: 2017-08-18 08:23:47 | Last updated: 2017-08-23 11:12:00

Enzyme selection workflow for pathway design

2 items in this pack

Comments: 0 | Viewed: 8 times | Downloaded: 2 times

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Workflows (3)

Workflow get_enzymes_by_compound (1)

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Retrieve all enzymes which have a link to a given compound id Input example: cpd:C00345

Created: 2008-10-08

Credits: User Franck Tanoh

Workflow get_enzymes_by_gene (1)

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Retrieve all the EC numbers which are assigned to a given gene Input example: eco:b0002

Created: 2008-10-08

Credits: User Franck Tanoh

Workflow Workflow for Selenzyme v 1.0 (2)

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No description

Created: 2017-08-18 | Last updated: 2017-09-08

Credits: User Pablo Carbonell

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Non-Information Resource URI: http://www.myexperiment.org/tags/146


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