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Items tagged with "sequencing" (4)

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Groups (1)

Network-member Next Generation Sequencing

Unique name: NextGenSeq
Created: Monday 23 November 2009 11:20:47 (UTC)

This group is for people wishing to contribute / find out more about 'Next Generation Sequencing' technology and data. Please feel free to join this group and add any workflows you think others may benefit from.

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Workflows (3)

Workflow The NOTCH2 workflow (1)

Analysis of the exome sequencing data for the following article: Nat Genet. 2011 Mar 6;43(4):306-8. Truncating mutations in the last exon of NOTCH2 cause a rare skeletal disorder with osteoporosis. Isidor B, Lindenbaum P, Pichon O, Bézieau S, Dina C, Jacquemont S, Martin-Coignard D, Thauvin-Robinet C, Le Merrer M, Mandel JL, David A, Faivre L, Cormier-Daire V, Redon R, Le Caignec C. using knime4bio

Created: 2011-09-06 | Last updated: 2011-09-06

Credits: User Pierre Lindenbaum

Workflow Define Associated Regions and Genes (2)

Defines regions and genes from associated SNPs A JAVA MySQL connector is required to run the workflow and must be placed in the $TAVERNA_HOME/lib directory.

Created: 2012-02-08 | Last updated: 2012-05-09

Credits: User Paul martin

Workflow Analysis of TE family sequencing read quan... (1)

This workflow is used to quantify the sequencing reads mapped to the transposable element families within Drosophila Transposon Sequences Canonical set v9.411 (Ashburner et al., 2016). For each sample, the reads of the sequencing data are clipped of their adapters and trimmed to 35bp using the Trimmomatic tool (Lohse et al., 2012). The reads are then aligned to the Drosophila Transposon Sequences Canonical set v9.411 (Ashburner et al., 2016) with Bowtie2 (Langmead & Salzberg, 2012). ...

Created: 2016-09-10 | Last updated: 2016-09-11

Credits: User Portia Hollyoak

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Non-Information Resource URI: http://www.myexperiment.org/tags/1689

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