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Items tagged with "genomics" (6)
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Created: 13/01/10 @ 18:52:45 | Last updated: 17/11/10 @ 14:13:20
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
Designed from an example workflow at Traverna, this workflow retrieves a set of sequences from UniProt, then simultaneously scans for transmembrane regions and performs a multiple alignment using EMMA. The alignment is then plotted to a set of PNG images, followed by a profile analysis using prophecy and prophet tools.
Rating: 0.0 / 5 (0 ratings) | Versions: 4 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 152 times | Downloaded: 60 times Tags (7): |
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Created: 14/05/09 @ 21:03:25 | Last updated: 14/05/09 @ 21:11:54
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
My first Taverna workflow: the input is the SNP "rs25". The Web Services invoked finds its position on the human genome and find its neighbours at 100bp. The XML result is then saved to a local file. The web services used here are under developpement and might be turned off in a near future.
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Created: 08/09/09 @ 15:12:57 | Last updated: 14/09/09 @ 14:16:40
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
GeNS workflow that lists the identifiers corresponding to a given species and data type. For instance, list all OMIM associated with the human species.
Disclaimer: This workflow is just a simple example designed for academic purposes.
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Created: 08/09/09 @ 15:13:44 | Last updated: 14/09/09 @ 14:14:32
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
Disclaimer: This workflow is just a simple example designed for academic purposes.
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Created: 25/08/11 @ 19:39:58 | Last updated: 25/08/11 @ 19:57:37
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
Batwing reads in multi-locus haplotype data, and model and prior distri- bution specifications, and uses a Markov chain Monte Carlo (MCMC) method based on coalescent theory to generate approximate random samples from the posterior distributions of parameters such as mutation rates, effective population sizes and growth rates, and times of population splitting events. It also generates approximate posterior samples of the entire genealogical tree underly- ing the sample, including the tree hei...
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Created: Thursday 30 October 2008 @ 16:39:23 (GMT)
The BioExtract Server (http://bioextract.org) is designed to contribute to meeting this need by allowing researchers via a Web browser to query multiple data sources, save query results as searchable data sets, execute local and Web-accessible analytic tools, and create computational workflows. The purpose of this group is to being the process of allowing researchers to share BioExtract Server ...
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