Tag Results

Items tagged with "grid" (7)

Note: some items may not be visible to you, due to viewing permissions.

Workflows (7)

Taverna 1 Original Uploader Steffen Möller	mustang provides structural alignment of two proteins (v3) Created: 20/08/08 @ 14:41:21 \| Last updated: 25/08/08 @ 15:40:45 Credits: Steffen Möller Attributions: Fetch PDB flatfile from RCSB server License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow experiments with the partial execution of jobs on a computational grid. The workflow elements "mustang" and "boxshade" are executed on grid nodes. Access to these resources is orchestrated with the plugin available on http://grid.inb.uni-luebeck.de. Please contact the author of this workflow for access permissions. Rating: 0.0 / 5 (0 ratings) \| Versions: 3 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 140 times \| Downloaded: 59 times Tags (5): alignment \| bioinformatics \| grid \| pdb \| protein structure	View Download (v3)
Chemistry Plan Original Uploader Glatard	GATE Monte-Carlo simulations (v3) Created: 23/05/09 @ 18:05:22 \| Last updated: 13/08/09 @ 17:14:25 Credits: Glatard License: Creative Commons Attribution-Share Alike 3.0 Unported License Application description is found in the following papers: Jan S et al, GATE: a simulation toolkit for PET and SPECT. Phys. Med. Biol. 49 (2004) 4543-4561 Sarrut D. and Guigues L. Region-oriented CT image representation for reducing computing time of Monte Carlo simulations. Med Phys. 35(4):1452-1463. 2008 Two components (fgate and merge, merge being disabled in experiments conducted for the heteropar and JGC papers) are run on the EGEE grid. A quite elaborated workflow is ma... Rating: 0.0 / 5 (0 ratings) \| Versions: 3 \| Reviews: 0 \| Comments: 1 \| Citations: 0 Viewed: 149 times \| Downloaded: 34 times Tags (2): grid \| medical imaging	View Download (v3)
Taverna 1 Original Uploader Angela Luijf	DNA sequence analysis pilot (v1) Created: 10/07/09 @ 14:31:27 \| Last updated: 30/11/09 @ 09:37:38 Credits: Angela Luijf Glatard License: Creative Commons Attribution-No Derivative Works 3.0 Unported License http://amc-app1.amc.sara.nl/twiki/bin/view/ Workflow-based DNA sequence analysis on the Dutch Life Science Grid, presented as Application Showcase at the NBIC Conference 2009, Lunteren, The Netherlands, 17 & 18 March 2009. http://www.biomedgrid.it/programme may 15th 2009. Hands on workflow: grid-enabled medical imaging (Johan Montagnat – Tristan Glatard) Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 1 \| Citations: 0 Viewed: 330 times \| Downloaded: 44 times Tags (5): grid \| moteur \| sequence \| taverna 1 \| workflow	View Download (v1)
Taverna 1 Original Uploader Angela Luijf	DNA sequence analysis pilot (Blat) (v2) Created: 20/11/09 @ 11:12:43 \| Last updated: 30/11/09 @ 09:35:38 Credits: Angela Luijf Barbera van Schaik Glatard Attributions: DNA sequence analysis pilot License: Creative Commons Attribution-Share Alike 3.0 Unported License http://amc-app1.amc.sara.nl/twiki/bin/view/ Workflow-based DNA sequence analysis on the Dutch Life Science Grid. This workflow is based on http://www.myexperiment.org/workflows/840 , the last component (Blast analysis) is replaced by Blat analysis Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 76 times \| Downloaded: 19 times Tags (7): analysis \| DNA \| grid \| moteur \| sequence \| taverna 1 \| workflow	View Download (v2)
Taverna 1 Original Uploader Barbera van Schaik	Sff2Fasta_Blast_ParseBlast (v1) Created: 22/09/10 @ 12:40:55 \| Last updated: 22/09/10 @ 13:35:26 Credits: Barbera van Schaik Antoine van Kampen Angela Luijf Silvia Olabarriaga License: Creative Commons Attribution-Share Alike 3.0 Unported License Blast Roche 454 sequences against a reference database on the Dutch Life Science Grid Conversion of Roche 454 sequences to fasta Blast sequences against a database Parse Blast results http://www.bioinformaticslaboratory.nl/ Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 27 times \| Downloaded: 14 times Tags (9): alignment \| BLAST \| conversion \| DNA \| grid \| moteur \| sequence \| taverna \| vbrowser	View Download (v1)
Taverna 1 Original Uploader Barbera van Schaik	Sff2Fasta_Blat (v1) Created: 22/09/10 @ 13:18:55 \| Last updated: 22/09/10 @ 13:35:49 Credits: Barbera van Schaik Antoine van Kampen Angela Luijf Silvia Olabarriaga License: Creative Commons Attribution-Share Alike 3.0 Unported License Blat Roche 454 sequences against a reference database on the Dutch Life Science Grid Conversion of Roche 454 sequences to fasta Blat sequences against a database http://www.bioinformaticslaboratory.nl/ Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 16 times \| Downloaded: 13 times Tags (9): alignment \| blat \| conversion \| DNA \| grid \| moteur \| sequence \| taverna \| vbrowser	View Download (v1)
Taverna 1 Original Uploader Barbera van Schaik	Sff2Fasta_Blast_Blat_ParseBlast (v1) Created: 22/09/10 @ 13:22:57 \| Last updated: 22/09/10 @ 13:36:12 Credits: Barbera van Schaik Antoine van Kampen Angela Luijf Silvia Olabarriaga License: Creative Commons Attribution-Share Alike 3.0 Unported License Blast and Blat Roche 454 sequences against a reference database on the Dutch Life Science Grid Conversion of Roche 454 sequences to fasta Blat sequences against a database Blast sequences against a database Parse Blast results http://www.bioinformaticslaboratory.nl/ Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 31 times \| Downloaded: 15 times Tags (10): alignment \| BLAST \| blat \| conversion \| DNA \| grid \| moteur \| sequence \| taverna \| vbrowser	View Download (v1)