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Achille Zappa

User: Achille Zappa

Name: Achille Zappa

Joined: Monday 12 January 2009 @ 13:41:53 (GMT)

Last seen: Wednesday 21 March 2012 @ 08:24:22 (GMT)

Email (public): achille.zappa [at] istge.it

Website: Not specified

Location: Italy

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14 Workflows

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Achille Zappa has been credited 14 times

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Occupation/Role(s): Ph.D. Student - Bioengineering

Organisation(s):

DIST - Department of Informatics, Systems and Telematics, University of Genoa ; Bioinformatics, IST - National Cancer Research Institute of Genoa

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Workflow

Taverna 2

Original Uploader

Achille Zappa

M_Super_aln_boot_phylo_New (v1)

Created: 18/04/11 @ 10:54:14 | Last updated: 18/04/11 @ 10:54:17

Credits: Achille Zappa

Attributions: EMBL-EBI ClustalW2 (SOAP)

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This workflow performs a generic protein sequence analysis. A multiple sequence alignment and finally a phylogenetic analysis.This workflow performs a generic protein sequence analysis. In order to do that a novel protein sequence enters into the software along with a list of known protein identifiers chosen by the biologist to perform a homology search, followed by a multiple sequence alignment and finally a phylogenetic analysis.This workflow performs "parallel" generic protein sequence ana...

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 14 times | Downloaded: 9 times

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Workflow

Taverna 2

Original Uploader

Achille Zappa

Workflow for Automated Comparative Protein Sequences Analysis (v2)

Created: 29/06/10 @ 12:59:57 | Last updated: 31/08/10 @ 09:43:41

Credits: Achille Zappa

Attributions: EBI_ClustalW_alignment_tree

License: Creative Commons Attribution-No Derivative Works 3.0 Unported License

This workflow performs "parallel" generic protein sequence analysis. In order to do that a list of known protein identifiers chosen by the biologist enters into the software to perform different multiple sequence alignments and finally phylogenetic analysis.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 48 times | Downloaded: 11 times

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Workflow

Taverna 1

Original Uploader

Achille Zappa

M_Fetch_e-T_phylo_boot - (BETA) (v1)

Created: 10/03/10 @ 15:44:02 | Last updated: 10/03/10 @ 15:49:06

Credits: Achille Zappa Hamish McWilliam

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This workflow performs a generic protein sequence analysis. In order to do that a novel protein sequence enters into the software along with a list of known protein identifiers chosen by the biologist to perform a homology search, followed by a multiple sequence alignment and finally a phylogenetic analysis.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 39 times | Downloaded: 13 times

Tags (12):

alignment
|
analysis
|
clustal
|
consensus
|
fetch
|
ml
|
muscle
|
nj
|
phylogeny
|
protein
|
sequence
|
tree

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Workflow

Taverna 1

Original Uploader

Achille Zappa

Search CABRI human and animal cell lines catalogues by cell line name and retrieve full cell line descriptions (v1)

Created: 15/01/10 @ 16:26:41 | Last updated: 15/01/10 @ 16:26:59

Credits: Achille Zappa

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This workflow takes the cell line name and the catalogue(s) name(s) as input and retrieve the full cell line description(s) by first retrieving the cell lines' unique IDs associated with the input (done via a call to the getCellLineIdsByName web service) and then using IDs for retrieving the full cell lines descriptions (done via a call to the getCellLinesByIds web service).

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 105 times | Downloaded: 38 times

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Workflow

Taverna 1

Original Uploader

Achille Zappa

Retrieve full descriptions of bacteria strains from CABRI catalogues (see www.cabri.org) by their scientific name (genus and species only) (v1)

Created: 15/01/10 @ 16:26:06

Credits: Achille Zappa

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This workflow retrieves the full description of bacteria strains that are available in the CABRI network services (see www.cabri.org). Input are the name of the involved CABRI catalogues (text/plain string with one catalogue name per line) and the scientific name of the desired bacteria strain (a text/plain string including genus and species separated by a blank space). Data are retrieved from the CABRI Web Services in two steps. First, all bacteria strains IDs are retrieved by using the ge...

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Viewed: 40 times | Downloaded: 17 times

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Workflow

Taverna 1

Original Uploader

Achille Zappa

Search TP53 Somatic Mutation catalogue by intron and effect and retrieve full somatic mutation descriptions (v1)

Created: 15/01/10 @ 16:25:32

Credits: Achille Zappa

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This workflow takes the intron, the effect and the TP53 somatic mutation database as input and retrieves the full TP53 somatic mutation description(s) by first retrieving two different outputs: - first output: a TP53 somatic mutation database unique IDs list associated with the input intron (done via a call to the getP53MutationIdsByIntron web service) - second otput: a TP53 somatic mutation database unique IDs list associated with the input effect (done via a call to the getP53MutationIdsB...

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Viewed: 20 times | Downloaded: 15 times

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Workflow

Taverna 1

Original Uploader

Achille Zappa

Search TP53 Somatic Mutation catalogue by intron and by effect according to the boolean operators (�and�, �or� and �butnot�) and retrieve full somatic mutation descriptions (v1)

Created: 15/01/10 @ 16:24:42

Credits: Achille Zappa

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This workflow takes the intron, the effect and the TP53 somatic mutation database as input and retrieves the full TP53 somatic mutation description(s) by first retrieving two different outputs and arranging them according to the boolean operators (and, or and butnot): - first output: a TP53 somatic mutation database unique IDs list associated with the input 'intron' (done via a call to the getP53MutationIdsByIntron web service) - second output: a TP53 somatic mutation database unique IDs list...

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 15 times | Downloaded: 13 times

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Workflow

Taverna 1

Original Uploader

Achille Zappa

Get TP53 Mutations By Intron (v1)

Created: 15/01/10 @ 16:24:10

Credits: Achille Zappa

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This workflow takes the intron and the TP53 somatic mutation database as input and retrieve the full TP53 somatic mutation description(s) by first retrieving the TP53 somatic mutation database unique IDs associated with the input (done via a call to the getP53MutationIdsByIntron web service) and then using IDs for retrieving the full TP53 somatic mutations descriptions (done via a call to the getP53MutationsByIds web service). Special requirements on input data are: - The intron range of numb...

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 21 times | Downloaded: 7 times

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Workflow

Taverna 1

Original Uploader

Achille Zappa

Search TP53 Somatic Mutation catalogue by exon and effect and retrieve full somatic mutation descriptions (v1)

Created: 15/01/10 @ 16:23:23

Credits: Achille Zappa

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This workflow takes the exon, the effect and the TP53 somatic mutation database as input and retrieves the full TP53 somatic mutation description(s) by first retrieving two different outputs: - first output: a TP53 somatic mutation database unique IDs list associated with the input exon (done via a call to the getP53MutationIdsByExon web service) - second output: a TP53 somatic mutation database unique IDs list associated with the input effect (done via a call to the getP53MutationIdsByEffe...

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 28 times | Downloaded: 17 times

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Taverna 1

Original Uploader

Achille Zappa

Search TP53 Somatic Mutation catalogue by exon and by effect according to the boolean operators (�and�, �or� and �butnot�) and retrieve full somatic mutation descriptions (v1)

Created: 15/01/10 @ 16:22:15

Credits: Achille Zappa

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This workflow takes the exon, the effect and the TP53 somatic mutation database as input and retrieves the full TP53 somatic mutation description(s) by first retrieving two different outputs and arranging them according to the boolean operators (�and�, �or� and �butnot�): - first output: a TP53 somatic mutation database unique IDs list associated with the input 'exon' (done via a call to the getP53MutationIdsByExon web service) - second output: a TP53 somatic mutation database unique IDs li...

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 18 times | Downloaded: 15 times

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Workflow

Taverna 1

Original Uploader

Achille Zappa

Get TP53 Mutations By Exon (v1)

Created: 15/01/10 @ 16:21:45

Credits: Achille Zappa

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This workflow takes the exon and the TP53 somatic mutation database as input and retrieve the full TP53 somatic mutation description(s) by first retrieving the TP53 somatic mutation database unique IDs associated with the input (done via a call to the getP53MutationIdsByExon web service) and then using IDs for retrieving the full TP53 somatic mutations descriptions (done via a call to the getP53MutationsByIds web service). Special requirements on input data are: - The exon range of numbers is...

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 14 times | Downloaded: 8 times

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Taverna 1

Original Uploader

Achille Zappa

Get TP53 Mutation Function Entries And TP53 Cell Line Entries By MutAa And Codon Number (v1)

Created: 15/01/10 @ 16:18:54 | Last updated: 15/01/10 @ 16:20:32

Credits: Achille Zappa

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This workflow retrieves from two different databases two distinct set of entries starting from the same inputs data (i.e. the Mutated Aminoacid encoded at the codon in which the mutation occurred, and the Codon Number where the mutation occurs). Input data: Mutant Amino Acid encoded at the codon in which the mutation occurred and Codon Number where the mutation is located. Special requirements on input data are: - the MutAA (Mutated Amino Acid) in three letters code (Gly, Ala, Trp, Phe etc.)...

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 18 times | Downloaded: 11 times

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Taverna 1

Original Uploader

Achille Zappa

MY_Multi_Alignment_Phylo (v1)

Created: 03/11/09 @ 14:46:38

Credits: Achille Zappa