User: Paul Fisher
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Name: Paul Fisher Joined: Thursday 26 July 2007 @ 16:46:52 (BST) Last seen: Thursday 20 November 2008 @ 16:59:04 (GMT) Email (public): fisherp [at] cs.manchester.ac.uk Website: http://www.cs.man.ac.uk/~fisherp/ Location: Manchester, United Kingdom |
Paul Fisher has been credited 86 times Paul Fisher has an average rating of: 4.2 / 5 (17 ratings in total) for their items |
I am a third year PhD student. Our research focuses on using QTL and microarray data, looking at the level of biological pathway, to identify novel links between Genotype and Phenotype.
Other contact details:
Not specifiedInterests:
Workflows
QTL analysis
Microarrays
Biological pathway analysis
In silico automation
Protein 3D structure prediction
Disease gene identification
Field/Industry: Bioinformatics
Occupation/Role(s): 3rd Year PhD Student
Organisation(s):
University of Manchester
Note: some items may not be visible to you, due to viewing permissions.
1. Retrieve Protein Sequence
2. Pathway to Pubmed
3. Human Pathways from Diff Expressed Genes
4. Microarray CEL file to candidate pathways
5. Add Mesh String to Biological Process
6. Perfrom a text based search through PubMed
7. Parse UniProt text file
8. Perform a search through NCBI eUtils eSearch
9. BLAST using DDBJ service
10. Simpliy a BLAST text file
11. BLASTP with simplified results returned
12. Pathways from Diff Expressed Genes
13. Remove null values
14. Remove duplicate strings
15. Back translate a protein sequence into a dna sequence
16. Mouse Pathways and Gene annotations for QTL Phenotype
17. Cow-Human Ortholog Pathways and Gene annotations for QTL Phenotype
18. Entrez Gene to KEGG Pathway
19. Transcribe a DNA sequence into an RNA sequence
20. KEGG pathways common to both QTL and microarray based investigations
21. HUMAN Microarray CEL file to candidate pathways
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Created: 30/07/08 @ 16:36:56
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Taverna 1
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Created: 09/03/08 @ 15:03:12 | Last updated: 08/07/08 @ 12:13:06
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Taverna 1
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Created: 08/02/08 @ 14:30:18 | Last updated: 08/02/08 @ 14:30:19
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Taverna 1
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Created: 08/02/08 @ 14:17:23 | Last updated: 14/05/08 @ 15:43:23
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Taverna 1
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Created: 03/10/07 @ 18:36:28 License: Creative Commons Attribution-NoDerivs 3.0 License
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Taverna 1
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Created: 03/10/07 @ 18:36:08 | Last updated: 02/08/08 @ 14:35:11 License: Creative Commons Attribution-NoDerivs 3.0 License Rating: 3.0 / 5 (2 ratings) | Versions: 3 | Reviews: 0 | Comments: 1 | Citations: 0 Viewed: 959 times | Downloaded: 30 times Tags (7): |
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Taverna 1
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Created: 03/10/07 @ 18:36:08 | Last updated: 13/11/07 @ 16:08:44 License: Creative Commons Attribution-NoDerivs 3.0 License Rating: 3.0 / 5 (1 rating) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 609 times | Downloaded: 590 times Tags (1): |
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Taverna 1
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Created: 03/10/07 @ 18:36:07 | Last updated: 13/11/07 @ 16:11:50 License: Creative Commons Attribution-NoDerivs 3.0 License
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Taverna 1
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Created: 03/10/07 @ 18:36:06 | Last updated: 13/11/07 @ 16:13:48 License: Creative Commons Attribution-NoDerivs 3.0 License
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Taverna 1
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Created: 03/10/07 @ 18:36:06 | Last updated: 13/11/07 @ 16:28:08 License: Creative Commons Attribution-NoDerivs 3.0 License Rating: 4.0 / 5 (1 rating) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 929 times | Downloaded: 705 times Tags (11):
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Taverna 1
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Created: 03/10/07 @ 18:36:06 | Last updated: 13/11/07 @ 16:14:48 License: Creative Commons Attribution-NoDerivs 3.0 License Rating: 4.0 / 5 (1 rating) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 756 times | Downloaded: 729 times Tags (6):
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Taverna 1
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Created: 03/10/07 @ 18:36:05 | Last updated: 11/07/08 @ 10:52:01 License: Creative Commons Attribution-Share Alike 3.0 License Rating: 5.0 / 5 (1 rating) | Versions: 3 | Reviews: 0 | Comments: 1 | Citations: 1 Viewed: 1153 times | Downloaded: 1072 times Tags (19):
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Taverna 1
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Created: 03/10/07 @ 18:36:05 | Last updated: 13/11/07 @ 16:20:42 License: Creative Commons Attribution-NoDerivs 3.0 License
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Taverna 1
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Created: 03/10/07 @ 18:36:03 | Last updated: 13/11/07 @ 16:25:42 License: Creative Commons Attribution-NoDerivs 3.0 License
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Taverna 1
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Created: 03/10/07 @ 18:36:03 | Last updated: 13/11/07 @ 16:17:30 License: Creative Commons Attribution-NoDerivs 3.0 License
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Taverna 1
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Created: 03/10/07 @ 18:36:02 | Last updated: 20/02/08 @ 16:05:45 License: Creative Commons Attribution-Share Alike 3.0 License Rating: 4.5 / 5 (2 ratings) | Versions: 3 | Reviews: 0 | Comments: 2 | Citations: 1 Viewed: 1431 times | Downloaded: 1448 times Tags (12):
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Taverna 1
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Created: 03/10/07 @ 18:36:00 | Last updated: 20/02/08 @ 16:03:59 License: Creative Commons Attribution-NoDerivs 3.0 License
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Taverna 1
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Created: 03/10/07 @ 18:36:00 | Last updated: 13/11/07 @ 16:16:10 License: Creative Commons Attribution 3.0 License Rating: 4.7 / 5 (3 ratings) | Versions: 2 | Reviews: 0 | Comments: 1 | Citations: 0 Viewed: 1587 times | Downloaded: 981 times Tags (8): |
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Taverna 1
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Created: 03/10/07 @ 18:35:58 | Last updated: 13/11/07 @ 16:16:54 License: Creative Commons Attribution-NoDerivs 3.0 License
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Taverna 1
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Created: 03/10/07 @ 18:35:58 | Last updated: 13/11/07 @ 16:22:14 License: Creative Commons Attribution-NoDerivs 3.0 License Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 1 Viewed: 888 times | Downloaded: 731 times Tags (11):
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Taverna 1
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Created: 03/10/07 @ 18:35:55 | Last updated: 04/04/08 @ 12:14:21 License: Creative Commons Attribution-NoDerivs 3.0 License Rating: 5.0 / 5 (1 rating) | Versions: 4 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 1747 times | Downloaded: 1636 times Tags (12):
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