User: Paul Fisher
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Name: Paul Fisher Joined: Thursday 26 July 2007 @ 16:46:52 (BST) Last seen: Monday 29 June 2009 @ 17:18:48 (BST) Email (public): fisherp [at] cs.manchester.ac.uk Website: http://www.cs.man.ac.uk/~fisherp/ Location: Manchester, United Kingdom |
Paul Fisher has been credited 166 times Paul Fisher has an average rating of: 4.2 / 5 (17 ratings in total) for their items |
I am a fourth year PhD student. My research focuses on using QTL and microarray data, looking at the level of biological pathway, to identify novel links between Genotype and Phenotype. I am conducting these correlations thorugh the use of web services and workflows.
These have been tested on African Trypanosomiasis in both Cattle and mice, Lung Cancer, infection of a mouse with Trichuris muris, and Colitis / Inflammatory bowel disease.
Other contact details:
Not specifiedInterests:
Workflows
QTL analysis
Microarrays
Biological pathway analysis
In silico automation
Protein 3D structure prediction
Disease gene identification
Field/Industry: Bioinformatics
Occupation/Role(s): 4th Year PhD Student
Organisation(s):
University of Manchester
Note: some items may not be visible to you, due to viewing permissions.
1. NCBI Gi to Kegg Pathways
2. inchi to Chebi
3. Pathways and Gene annotations for Arabidopsis affy data
4. Get Kegg Gene information
5. Retrieve Protein Sequence
6. Pathway to Pubmed
7. Human Pathways from Diff Expressed Genes
8. Microarray CEL file to candidate pathways
9. Add Mesh String to Biological Process
10. Perfrom a text based search through PubMed
11. Parse UniProt text file
12. Perform a search through NCBI eUtils eSearch
13. BLAST using DDBJ service
14. Simpliy a BLAST text file
15. BLASTP with simplified results returned
16. Pathways from Diff Expressed Genes
17. Remove null values
18. Remove duplicate strings
19. Back translate a protein sequence into a dna sequence
20. Mouse Pathways and Gene annotations for QTL Phenotype
21. Cow-Human Ortholog Pathways and Gene annotations for QTL Phenotype
22. Entrez Gene to KEGG Pathway
23. Transcribe a DNA sequence into an RNA sequence
24. KEGG pathways common to both QTL and microarray based investigations
25. HUMAN Microarray CEL file to candidate pathways
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Taverna 1
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Taverna 1
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Created: 05/01/09 @ 13:20:34 | Last updated: 26/01/09 @ 18:06:13
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Taverna 1
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Created: 09/03/08 @ 15:03:12 | Last updated: 08/07/08 @ 12:13:06
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Taverna 1
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Taverna 1
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Created: 08/02/08 @ 14:17:23 | Last updated: 13/02/09 @ 11:29:54
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Taverna 1
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Taverna 1
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Created: 03/10/07 @ 18:36:08 | Last updated: 02/08/08 @ 14:35:11 License: Creative Commons Attribution-NoDerivs 3.0 License Rating: 3.0 / 5 (2 ratings) | Versions: 3 | Reviews: 0 | Comments: 1 | Citations: 0 Viewed: 241 times | Downloaded: 4 times Tags (7): |
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Taverna 1
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Created: 03/10/07 @ 18:36:08 | Last updated: 13/11/07 @ 16:08:44 License: Creative Commons Attribution-NoDerivs 3.0 License Rating: 3.0 / 5 (1 rating) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 50 times | Downloaded: 40 times Tags (1): |
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Taverna 1
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Taverna 1
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Created: 03/10/07 @ 18:36:06 | Last updated: 13/11/07 @ 16:13:48 License: Creative Commons Attribution-NoDerivs 3.0 License
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Taverna 1
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Created: 03/10/07 @ 18:36:06 | Last updated: 13/11/07 @ 16:28:08 License: Creative Commons Attribution-NoDerivs 3.0 License Rating: 4.0 / 5 (1 rating) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 138 times | Downloaded: 80 times Tags (11):
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Taverna 1
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Created: 03/10/07 @ 18:36:06 | Last updated: 13/11/07 @ 16:14:48 License: Creative Commons Attribution-NoDerivs 3.0 License Rating: 4.0 / 5 (1 rating) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 157 times | Downloaded: 53 times Tags (6):
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Taverna 1
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Created: 03/10/07 @ 18:36:05 | Last updated: 11/07/08 @ 10:52:01 License: Creative Commons Attribution-Share Alike 3.0 License Rating: 5.0 / 5 (1 rating) | Versions: 3 | Reviews: 0 | Comments: 3 | Citations: 1 Viewed: 235 times | Downloaded: 69 times Tags (18):
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Taverna 1
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Created: 03/10/07 @ 18:36:05 | Last updated: 13/11/07 @ 16:20:42 License: Creative Commons Attribution-NoDerivs 3.0 License
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Taverna 1
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Created: 03/10/07 @ 18:36:03 | Last updated: 13/11/07 @ 16:25:42 License: Creative Commons Attribution-NoDerivs 3.0 License
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Taverna 1
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Created: 03/10/07 @ 18:36:03 | Last updated: 13/11/07 @ 16:17:30 License: Creative Commons Attribution-NoDerivs 3.0 License
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Taverna 1
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Created: 03/10/07 @ 18:36:02 | Last updated: 20/02/08 @ 16:05:45 License: Creative Commons Attribution-Share Alike 3.0 License Rating: 4.5 / 5 (2 ratings) | Versions: 3 | Reviews: 0 | Comments: 2 | Citations: 1 Viewed: 345 times | Downloaded: 96 times Tags (13):
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Taverna 1
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Created: 03/10/07 @ 18:36:00 | Last updated: 20/02/08 @ 16:03:59 License: Creative Commons Attribution-NoDerivs 3.0 License
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Taverna 1
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Taverna 1
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Created: 03/10/07 @ 18:35:58 | Last updated: 13/11/07 @ 16:16:54 License: Creative Commons Attribution-NoDerivs 3.0 License
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Taverna 1
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Created: 03/10/07 @ 18:35:58 | Last updated: 13/11/07 @ 16:22:14 License: Creative Commons Attribution-NoDerivs 3.0 License Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 1 Viewed: 112 times | Downloaded: 64 times Tags (11):
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Taverna 1
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Created: 03/10/07 @ 18:35:55 | Last updated: 04/04/08 @ 12:14:21 License: Creative Commons Attribution-NoDerivs 3.0 License Rating: 5.0 / 5 (1 rating) | Versions: 4 | Reviews: 0 | Comments: 1 | Citations: 0 Viewed: 415 times | Downloaded: 162 times Tags (12):
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