Gb User: Aleksandra Pawlik


Name: Aleksandra Pawlik

Joined: Friday 03 May 2013 10:39:38 (UTC)

Last seen: Friday 24 April 2015 14:21:58 (UTC)

Email (public): aleksandra.pawlik [at]


Location: Manchester, United Kingdom

Aleksandra Pawlik has been credited 35 times

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Scientific Software development, best practices for software development, training

Field/Industry: Scientific Software

Occupation/Role(s): Instructor and Research Software Community Consultant


University of Manchester


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Workflow Visualize PAV provenance as SVG (1)

VoID descriptions are fetched as Turtle, cleaned up to be valid OWL ontology and include useful labels, processed through the OWL reasoner Pellet; this adds inferred PROV statements to the RDF, which is then fed to the PROV Toolbox, generating an SVG visualization of the provenance. Note that this workflow downloads CWM, Pellet and ProvToolbox on demand, and uses UNIX command line tools like wget and md5 which are unlikely to work in Windows. This workflow has been tested on Ubuntu 12.10 wit...

Created: 2014-05-08

Credits: User Katy Wolstencroft User Aleksandra Pawlik

Workflow Simple FASTA workflow (1)

A simple Taverna workflo

Created: 2014-01-22

Credits: User Aleksandra Pawlik User Katy Wolstencroft User Alan Williams

Workflow BioVeL workshop reduced full workflow (1)

The workflow is a reduced version of the main workflow. It can be used to call web services to support biodiversity research. It fetches data from GBIF. The occurrences are then used to create a model using OpenModeller, test the model and to project the model. The projection of the model is currently a "native projection" i.e. it uses the same layers as those used to create the model. The services within the workflow will allow non-native projections

Created: 2013-09-04

Credits: User Katy Wolstencroft User Alan Williams


Workflow v2 Retry-Example (1)

No description

Created: 2013-09-03

Credits: User Aleksandra Pawlik

Workflow Pathway to Pubmed (1)

This workflow takes in a list of KEGG pathway descriptions and searches the PubMed database for corresponding articles. Any matches to the pathways are then retrieved (abstracts only). These abstracts are then returned to the user.

Created: 2013-09-03

Credits: User Alan Williams User Paul Fisher

Attributions: Workflow Pathway to Pubmed

Workflow UnigeneID to KEGG Pathways (1)

This workflow accepts a list of Unigene gene identifiers and returns descriptions of gene functions and a list of all pathways each gene is involved in (plus pathway image) from the KEGG database. This workflow replaces the earlier SOAP version with the new KEGG REST services

Created: 2013-09-03

Credits: User Katy Wolstencroft User Alan Williams User Paul Fisher

Attributions: Workflow NCBI Gi to Kegg Pathways

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