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Name: Aleksandra Pawlik

Joined: Friday 03 May 2013 10:39:38 (UTC)

Last seen: Friday 24 April 2015 14:21:58 (UTC)

Email (public): aleksandra.pawlik [at] manchester.ac.uk

Website: http://www.mygrid.org.uk

Location: Manchester, United Kingdom

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6 Groups (admin)

2 Groups (member)

36 Files

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6 Workflows

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Aleksandra Pawlik has been credited 35 times

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Interests:

Scientific Software development, best practices for software development, training

Field/Industry: Scientific Software

Occupation/Role(s): Instructor and Research Software Community Consultant

Organisation(s):

University of Manchester

 

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Importing data from spreadsheets into Taverna workflows

Created: 2015-01-22 13:00:28

Credits: User Aleksandra Pawlik User Katy Wolstencroft User Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob RShell Tutorial for Taverna Workbench

Created: 2013-12-04 18:18:23

Credits: User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

RShell Tutorial for Taverna Workbench - using Rshell service in workflows.

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Exploring Taverna Engine - managing lists, looping, ...

Created: 2015-01-22 16:01:32

Credits: User Aleksandra Pawlik User Stian Soiland-Reyes User Katy Wolstencroft User Alan Williams User Christian

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File type: PowerPoint 2007 presentation

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Using REST services from Biocatalogue

Created: 2015-01-22 12:40:34 | Last updated: 2015-01-22 12:42:14

Credits: User Aleksandra Pawlik User Stian Soiland-Reyes User Katy Wolstencroft User Alan Williams User Christian

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File type: PowerPoint 2007 presentation

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Building simple workflow in Taverna

Created: 2015-01-22 12:38:13

Credits: User Aleksandra Pawlik User Stian Soiland-Reyes User Katy Wolstencroft User Alan Williams User Christian

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: PowerPoint 2007 presentation

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Short introduction to Taverna 2.5

Created: 2015-01-22 12:37:00

Credits: User Aleksandra Pawlik User Stian Soiland-Reyes User Katy Wolstencroft User Alan Williams User Christian

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File type: PowerPoint 2007 presentation

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Introduction to WebServices, Workflows and Taverna

Created: 2015-01-22 12:00:28 | Last updated: 2015-01-22 12:29:03

Credits: User Aleksandra Pawlik

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3366?size=60x60 Gb Norman Morrison
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Blob An introduction to designing and executing workflows...

Created: 2014-02-13 08:46:17

Credits: User Norman Morrison User Katy Wolstencroft User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This tutorial uses Bioinformatics exercises as an introduction to designing and executing workflows with Taverna.

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3366?size=60x60 Gb Norman Morrison
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Blob An introduction to Taverna components

Created: 2014-02-11 16:15:52 | Last updated: 2014-02-11 16:27:15

Credits: User Norman Morrison User Alan Williams User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: PowerPoint 2007 presentation

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3366?size=60x60 Gb Norman Morrison
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Blob Working with the BioVeL Portal

Created: 2014-02-11 16:12:36

Credits: User Norman Morrison User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

In this exercise we will upload and run a simple workflow that we created in the previous exercises on the BioVeL portal.

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3366?size=60x60 Gb Norman Morrison
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Blob Exploring the Taverna workflow engine

Created: 2014-02-10 14:45:48 | Last updated: 2014-02-10 14:46:54

Credits: User Norman Morrison User Katy Wolstencroft User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

In this tutorial we will explore the Taverna workflow engine, including: 1) iteration; 2) looping; 3) parallel invocation.

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3366?size=60x60 Gb Norman Morrison
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Blob An introduction to designing and executing workflows...

Created: 2014-02-06 14:52:19 | Last updated: 2014-02-06 16:45:12

Credits: User Norman Morrison User Katy Wolstencroft User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Part 1 - An introduction to designing and executing workflows with Taverna. Building a simple workflow.

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3366?size=60x60 Gb Norman Morrison
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Blob An introduction to designing and executing workflows...

Created: 2014-02-06 16:42:14 | Last updated: 2014-02-06 16:44:14

Credits: User Norman Morrison User Katy Wolstencroft User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Part 2 - An introduction to designing and executing workflows with Taverna. Importing and exporting data.

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3366?size=60x60 Gb Norman Morrison
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Blob Introduction to myExperiment

Created: 2014-02-06 14:46:10

Credits: User Norman Morrison User Katy Wolstencroft User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Introduction to building workflows with Taverna

Created: 2014-01-22 13:28:47

Credits: User Aleksandra Pawlik User Katy Wolstencroft User Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Introduction to building workflows with Taverna for the Cranfield University course.

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Cranfield - Introduction to webservices and workflows

Created: 2014-01-22 13:27:41

Credits: User Aleksandra Pawlik User Katy Wolstencroft User Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Introduction to workflows, web services and Taverna for the Cranfield University.

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Tutorial for Cranfield Course

Created: 2014-01-22 12:02:37

Credits: User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Test Data for Rservice Tutorial-Biodiversity

Created: 2014-01-19 14:38:17

Credits: User Aleksandra Pawlik User Norman Morrison User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Test data for R service tutorial usage in Taverna.

File type: Excel workbook

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Taverna Workbench Tool Tutorial

Created: 2013-12-06 13:31:31 | Last updated: 2013-12-06 13:31:34

Credits: User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: PowerPoint 2007 presentation

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Spreadsheet file with data for the species workflow ...

Created: 2013-11-28 19:47:35 | Last updated: 2013-12-05 13:56:23

Credits: User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Second spreadsheet file to be used for the Introduction to Taverna Workbench tutorial.

File type: Excel workbook

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Introduction to Taverna Workbench

Created: 2013-12-05 10:37:24 | Last updated: 2013-12-05 10:55:47

Credits: User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Introduction to Taverna Workbench - building workflows, using different data input formats, saving results, using Shim services.

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Taverna Components Tutorial

Created: 2013-12-04 18:17:05

Credits: User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Taverna Components Tutorial: creating and using components

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Taverna Workbench Engine Tutorial

Created: 2013-12-04 18:16:09

Credits: User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Taverna Workbench Engine Tutorial: cross and dot product, iteration, looping and control links.

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Data file for workflow retrieving species occurrence

Created: 2013-11-28 17:28:19 | Last updated: 2013-12-04 16:24:20

Credits: User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The second sample data file to be used for the Introduction to Taverna Workbench tutorial.

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Data file for workflow retrieving species occurrence

Created: 2013-11-28 19:20:04 | Last updated: 2013-12-04 16:24:05

Credits: User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Second data text file to be used for the Introduction to Taverna Workflows tutorial.

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Working with BioVel Portal

Created: 2013-12-04 15:20:31

Credits: User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Uploading and running your workflows in the BioVel Portal - tutorial.

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob RShell Exercise for the BioVel Workshop

Created: 2013-12-04 15:18:47 | Last updated: 2013-12-04 15:19:27

Credits: User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Exercise to practice using RShell Service.

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Introduction to myExperiment

Created: 2013-12-03 23:51:21 | Last updated: 2013-12-04 12:29:24

Credits: User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Introduction to myExperiment - short tutorial.

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Spreadsheet file with data for the species workflow

Created: 2013-12-04 12:09:18 | Last updated: 2013-12-04 12:16:25

Credits: User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A sample spreadsheet file including species names to be used as input file for the Introduction to the Taverna Workbench tutorial.

File type: Excel workbook

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Introduction to Taverna Online & Interaction

Created: 2013-09-06 09:04:41

Credits: User Aleksandra Pawlik User Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is an introductory tutorial for Taverna Online and Interaction service. To be used for the workshop at Bonn University 4-6 September 2013

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Introduction to Taverna Components - Bonn 2013

Created: 2013-09-06 07:39:49

Credits: User Aleksandra Pawlik User Stian Soiland-Reyes User Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is an introductory tutorial about Taverna Components to be used for the workshop at Bonn University 4-6 September 2013. Please note that as components are still under development some details presented in this tutorial may change in the future.

File type: PowerPoint 2007 presentation

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Workflow

Taverna 2
Uploader
4059?size=60x60 Gb Aleksandra Pawlik

Workflow Simple FASTA workflow (1)

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A simple Taverna workflo

Created: 2014-01-22

Credits: User Aleksandra Pawlik User Katy Wolstencroft User Alan Williams

Workflow

Taverna 2
Uploader
4059?size=60x60 Gb Aleksandra Pawlik

Workflow Visualize PAV provenance as SVG (1)

Thumb
VoID descriptions are fetched as Turtle, cleaned up to be valid OWL ontology and include useful labels, processed through the OWL reasoner Pellet; this adds inferred PROV statements to the RDF, which is then fed to the PROV Toolbox, generating an SVG visualization of the provenance. Note that this workflow downloads CWM, Pellet and ProvToolbox on demand, and uses UNIX command line tools like wget and md5 which are unlikely to work in Windows. This workflow has been tested on Ubuntu 12.10 wit...

Created: 2014-05-08

Credits: User Katy Wolstencroft User Aleksandra Pawlik

Workflow

Taverna 2
Uploader
Avatar Ruth Eberhardt

Workflow simple fasta workflow (1)

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workflow using services

Created: 2014-01-22

Credits: User Ruth Eberhardt User Aleksandra Pawlik

Workflow

Taverna 2
Uploader
4059?size=60x60 Gb Aleksandra Pawlik

Workflow v2 Retry-Example (1)

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No description

Created: 2013-09-03

Credits: User Aleksandra Pawlik

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